Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
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| SS Seq | CCSSSSSSCCCCCCCCCCHHHHHHHHHSSCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCSSSSSSCCCCCSSSSSSSSHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MVKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINTLADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECLLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPSADDNLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPS |
1 | 1y4wA | 0.09 | 0.08 | 3.20 | 0.72 | CEthreader | | YHNGTYHLFFQYNPGGIEWGNISWGHAISEDLTHWEEKPVALLARGFGSDVEMYFSGSAVADVNNTSGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAY---------------------SLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWVVVTSIAELHKLAIYTSDNLKDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSGLNPGGPPGTVGSGTQYFVGEFDG--TTFTPDADTVYPGNSTANWMDWGPDFYAAAGYNGLSLNDHVHIGWMNNWQYGANIPTYPRSAMAIPRHMALKTIGSKATLVQQPQEAWSSISNKRPIYSRTFKTLSEGSTNTTTTGETFKVDLSFSAKSKASTFAIALRASANFTEQTLVGYDFAKQQIFLDRTHSGDV |
2 | 6gmhQ | 0.06 | 0.05 | 2.40 | 0.97 | EigenThreader | | GGGGG--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFA--SSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF |
3 | 6tnfA3 | 0.11 | 0.10 | 3.46 | 0.58 | FFAS-3D | | ---IVLLLIHSTNSKNRKQTEKVLRSKIRLGCMPEQLMQNAFQNHSMVIKD----FFPSILSLAQTFLHSAHPAVVSFGSCMYKQAFQEVVCALVTHVCSLDVLTDLVILHPSLLLRYATFVKTILDSMQKLNPCQILFYILSTLGSYIQDDMHMVIRKW-----------LSSSVPNHKQMGIIGAVTMMGSVA--------LIECDGQLSTLLDLVGFCCEQTPEVLALYY---DELANLIEKQKGNLDLQLLDKFGKSLVEDFPNDFVVDLSPTVDGSFLFPVKSLYNLDEDETQGAIAINLLPLVSQKRVVSPICLSPCFRLLRLYQNNGSLEEIDALLGCPLYLTDLEVEGKLDSLSKQEREFLCSLLFYAL---------NWFREVVNAFCQQQDAEMKGKVLTRLQNITELVPPPA-------- |
4 | 7abiM | 0.07 | 0.07 | 2.86 | 0.74 | SPARKS-K | | FSVKCWLRYIEFKQGAPKPRLNQLYERALKLLCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCRAFVFMHKMPRLWLDYCQFTHTRRTFDRALRAL-PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKQRLATVVNKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLG--KLWCSLADYYIRARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHH------VHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVFAKFYEDNGQLDDTKVNFKQVDDLASVWCQCGELLRHENYDEALRLLRKATRAEYFDGSEPVQNRVYKSLKVADLEESLGTFQSTK |
5 | 5jtgA | 0.11 | 0.04 | 1.51 | 0.68 | CNFpred | | SEQVSLILTKNCVL--------MFQEK------IGDVFDPVRERIRYNR-GIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLER-----PEKETVQRTHQLKRNLVELRKTIWP-------------LREVLSSLYRDVPPLIEKETVP--------------------YFRKVYDHTIQIADTVETFRD------IVSGLLDVYLSSVSNKT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 4o9xA | 0.06 | 0.04 | 1.72 | 0.67 | DEthreader | | LAYQDFSDLDGSGPTDLNKSGNGFAE-P---V---L--------MADVQGLGVASDLTNMKPWLLNEMNVHHTLR----Y--RSSSQFWLDEKAAALTT--RYARYVELKEYWSEPVTERNYPCSQVQYPQLRTYGLKPREY----NQS-LS----------------------------------SD-KLSTTLEQAGYQAHHGNTQLTGKITLIWDVVVQTSAKYDWRFLTPV-------EGRLPGR-----GN-TEAEKDHNLAGQCVRHYDT--------GV-TRLESL-S-----LTGTVLSQSSQLLIDTQEQNMLADDIYTTLSQQLYQL------SGDGRRMLKIN----------------YLPNLELRLTTEDLQVITAQVRVLHWE---------------------------------- |
7 | 2pffB | 0.07 | 0.06 | 2.74 | 1.29 | MapAlign | | -ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLNDTTLVKTKELIKNYITARIFEELRDLY---QTYHVLVGDLIKFSAETLSEGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAAITVLFFIGVRCMLSISNLTQEQVQDYVNKTISLVNGAKNLVVSPQSLYGLNLTLRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS |
8 | 1zvoC | 0.11 | 0.11 | 3.92 | 0.58 | MUSTER | | RLQLQ---ESGPGLVKPSE-TLSLT-IVSGGPIRRTGYY-WG--IRQPPGKGLEWIGGVYYTGSIYYNPSLRVTISVDTSRNQFS-L-NLRSMSAADTAMRGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLASVTVTWYMGTQSQPQRTFPEIQRRDSYYMTTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHVPTGGVE--EGLLERHSNGSQSQHSRLTLPRSLWNPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLEDQREVNTSGFAPARPPPQPGSTTFWAW |
9 | 2pffB | 0.17 | 0.15 | 4.80 | 0.91 | HHsearch | | MDAYS---------------TRPLTLSHGSL-EHVLLVPTASFFIASQLQEQFNFAADPAELVGKFLGYVSSLVEPSK-VGQFDQVLNLCLTEENCYLEGNDIHALAAKLKELIKNYITARIMAKRKLVAIFGGNTDELRDLYQTYHVLVGDLSELIAEKVFTQGLNILEWLENPSNTGHSQGLVTAVA-I--AETDSWESFF-VSVRKAITVLFGVRCYEAYPNTSLPPS--ILEDSLENNEGVPSPMLSISN--------------------------------------LTQEQVDYVNKQVEISL--VNGAKNLVVSGPPQSLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINDLVKNNVSFNAKDIQIPVYDTFDGSDLPVKWEGLGKDGTGVRVIVAGTLDINPDDDY |
10 | 6m2tA | 0.12 | 0.10 | 3.71 | 0.64 | CEthreader | | SGALHPVLKAALTKSDHEVQRVIVSRPAAPLEPGEVDFAEFVGAHAPLEKPAATQADDPAFWLYSSGSTGRPKGVVHTHANPYWTSELYGRNTLHLREDDVCFSAAKLFFAYGLGNALTFPMTVGATTLLMGERPTPDAVFKRWLGGVGGVKPTVFYGAPTGYAGMLAAPNLPSRDQVALRLASSALPAEIGQRFQRHFGLDIVDGIGSTEMLAAFLSNLPDRVRYGTTGWPVPGYQILRGDGGGPVADGEPGDLYIHGPSSATMYWGNRAKSRDTFQGGWTKSGDKYVRNDYAGRTDDMLKVPFEIEAT---------LVQHPGVLEAAVVGVADEHGLTKPKAYVVPRPGQTLSETKDRLAPYKYPRSTVFVAELPKTATGKIQRFKLREGVL------------------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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