Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440
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| SS Seq | CHHHHHHHHHHHHHHHHCCCCCSSSSSCCSSSCCCCSSSSSSSSCCCCCSSSSSSSSSCCCCSSSSSSSSSCCCCSSSSSSSSCCCCCCCCSSSSSSSSSSSCCSSSSSSSSSSSSSCCCSSSSSSCHHHCCCCCSSSSSSSSSCCCCCSCCCCSSSSSSSCCCCCSSSSSSSCCCCCCSSSSSSSCCCCCCCCSSSSSSSCCCCSSSSSSSSSSSCCSSSSSSCCCCCCCCSSSSSSSSSSCCCCCCCSSSSSSSSSSCCCCCCCCCSSSSSSCCCCCCSSSSSSCCCCCCCCCCSSSSSSSSCCCCSSSSSSSSSSSSSSCCCSSSSSSCCCCCCCCCSSSSSSSCCCCCSSSSSSSSHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCSSSSSSSCCCCCCSSSSSSSSSCCCCCSSSCCCCSSSSC MWAQLLLGMLALSPAIAEELPNYLVTLPARLNFPSVQKVCLDLSPGYSDVKFTVTLETKDKTQKLLEYSGLKKRHLHCISFLVPPPAGGTEEVATIRVSGVGNNISFEEKKKVLIQRQGNGTFVQTDKPLYTPGQQVYFRIVTMDSNFVPVNDKYSMVELQDPNSNRIAQWLEVVPEQGIVDLSFQLAPEAMLGTYTVAVAEGKTFGTFSVEEYVLPKGIHRLNGPLKCGQPQEVLVDYYIDPADASPDQEISFSYYLIGKGSLVMEGQKHLNSKKKGLKASFSLSLTFTSRLAPDPSLVIYAIFPSGGVVADKIQFSVEMCFDNQVSLGFSPSQQLPGAEVELQLQAAPGSLCALRAVDESVLLLRPDRELSNRSVYGMFPFWYGHYPYQPLHQAEDSQVRQYFPETWLWDLFPIGNSGKEAVHVTVPDAITEWKAMSFCTSQSRGFGLSPTVGLTAF |
1 | 2b39A | 0.13 | 0.11 | 3.80 | 1.00 | DEthreader | | -------------------------TPNILRLE-SEETVVLEA--HGGQGIVSVTVHDKKQVLSNENTQLNSNNGYLSTVTIKIPASKELKKFVTVVATFGN---VQVEKVVLISL-QSGYLFIQTDK-TIYTPSTVLYRVFTVDHKLPVGQ-TVFITIETP--DGIPVKRDSKSSNQILTLSWNIVNMGVW---KIKAYYEDPQVFSAEFTGDGSPDVKPRVELKP---G-ETLNVNFHL-R--TDPGEQIYYTYMIMNKKLLKVGRQYREPGQ---D-LVVLPLTITS--DFIPSFRLVAYYTLEVVADSVWVDVDSCMGT--LVVKNGGKEEKHHRPGQITLKIADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIGCTPG-----------SRSQFPSWLWTVIEDLKKLMNVFLKDSIT--TWEILAVSLSDKKGICVADPYEVTVM |
2 | 2pn5A1 | 0.23 | 0.21 | 6.51 | 2.49 | SPARKS-K | | ----------------------LLVVGPKFIRANQEYTLVISNFNSQLS-KVDLLLKLELSVLNVTKMVDVRRNMNRMINFNMP--EDLTAGNYKITIDGQRG-FSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPARVSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEGVSKTFEVKEYVLSTFDVQVMPQFRPGLPFKCALQFTLQPSEETVTDRMFFVYYVMSKGNIIDAGFMRPNK-----QPKYLLQLNATEKMIPRAKILIATVAG-RTVVYDFADLAFQELR-NNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDDIFHSLGLFARTLDD---ILFDSQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKPIQFTT- |
3 | 4acqA | 0.37 | 0.36 | 10.54 | 1.24 | MapAlign | | ------------------GKPQYMVLVPSLLHTETTEKGCVLLSYLNETVTVSASLESVRGNRSLFTDLEAENDVLHCVAFAV-PKSSSNEEVMFLTVQVKGPTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLN-ELILVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKRTEHPFTVEEFKSFVHLEPMSHELPCGHTQTVQAHYILNGGTLLGLKKLSFYYLIMAKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCLANKVDLSFSP-SQSLPSHAHLRVTAAPQSVCALRAVDQSVLLMKPDAELSASSVYNEDMGLKAFTNSKIRKPKMCETVRKYFPETWIWDLVVVNS-AGVAEVGVTVPTITEWKAGAFCLSEDAGLGISSTASLRAF |
4 | 4acqA | 0.40 | 0.39 | 11.37 | 1.03 | CEthreader | | ------------------GKPQYMVLVPSLLHTETTEKGCVLLSYLNETVTVSASLESVRGNRSLFTDLEAENDVLHCVAFAVPKSSS-NEEVMFLTVQVKGPTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKRTEHPFTVEEFVLPKFEVQVSHELPCGHTQTVQAHYILNGGTLLGLKKLSFYYLIMAKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCLANKVDLSFSPSQSLPASHAHLRVTAAPQSVCALRAVDQSVLLMKPDAELSASSVYNLLPEKDLTGFPKIRKPKMCETVRKYFPETWIWDLVVVNSAGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAF |
5 | 2pn5A1 | 0.23 | 0.21 | 6.63 | 1.71 | MUSTER | | ----------------------LLVVGPKFIRANQEYTLVISNFNSQLS-KVDLLLKLELSVLNVTKMVDVRRNMNRMINFNMPEDL--TAGNYKITIDGQ-RGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPARKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVELVSKTFEVKEYVLSTFDVQVMPSVIPADQQDVPVKVSFVEQYTNTERMTFFVYYVMSKGNIIDAGFMRPN-----KQPKYLLQLNATEKMIPRAKILIATVAG-RTVVYDFADLAFQ-ELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFNEFDIFHSLFARTLDDILFDSQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKPIQFTT- |
6 | 3prxB | 0.22 | 0.20 | 6.27 | 3.68 | HHsearch | | --------------------ALYTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPQKTLFQTRVDMNPGMLVTPTIEIPAKVSTSRQQYVVQVT--GP--QVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNK------TVIVEFQTPEGILVSSNSV--D--LNFFWPYNLPDLVSLGTWRIVAKYENYTAYFDVRKYVLPSFEVRLQKYFKPGMPYELTVYLILNIPLNKPGQIKYFTYLILNKGKIFKVGRQPRRDG----QNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKIWDTIEKSDFGCTQDGFIADSDIISRSDFPKSWLWLTKDLTSQGSKTMSFYLRDSITTWVVLAVSFTPTKGICVAEPYEIRVM |
7 | 4acqA | 0.41 | 0.39 | 11.49 | 2.65 | FFAS-3D | | ------------------GKPQYMVLVPSLLHTETTEKGCVLLSYLNETVTVSASLESVRGNRSLFTDLEAENDVLHCVAFAVPKSSSNEE-VMFLTVQVKGPTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQGGRTEHPFTVEEFVLPKFEVQMSHELPCGHTQTVQAHYILNGGTLLGLKKLSFYYLIMAKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCLANKVDLSFSPSQSLPASHAHLRVTAAPQSVCALRAVDQSVLLMKPDAELSASSVYNLLPEKDLTGFPGPLNDQDNETVRKYFPETWIWDLVVVNSAGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAF |
8 | 3prxB | 0.12 | 0.11 | 3.90 | 1.37 | EigenThreader | | VL-----------------PSFEVRLQPSEFYIDNFHVSITARYLYGEEVFVLFGVKIDDAKKSILTRIPIIDG--DGKATLKPNLNELVGHTLYASVTVMTSDMVVTEQSGIHIVASPYQIHF---TKTPKPGMPYELTVYVTNPDGSPA--AHVPVVSE--AFH----SMGTTLSDGTAKLILNIPLNAQSL---PITVRTNKSMTA----IAYQTQVAITSTE-IKPGDNLPVNFNVKGNANSLKQIKYFTYLILN-KGKIFKVGRQPRRDG--QNLVTMNLHITPDLI--PSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKIWDTIEKKQRSAAKCPQEDGFIADSDIISRSDFPKTKDLTEEPNSKTMSFYLRDSITTWVVLAVSFTPTKGICVAEP-YEIRV |
9 | 2pn5A | 0.19 | 0.17 | 5.42 | 4.60 | CNFpred | | ---------------------TFDVQVMPPLEEHQAVNLTIEANYH-VQGVAKVELYLDDDKLKLKKELTVY--GKGQVELRFDNFAMADQQDVPVKVSFVEQNRTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEVSD----VRFETTTTSDNDGLIKLELQPSE--GTEQLSIHFNAVGFFFYEDVNKVEDAYIKLELKSPIKRNKLMRFMVTCTERM--------TFFVYYVMSKGNIIDAGFMRP-----NKQPKYLLQLNATEKMIPRAKILIATVAG-RTVVYDFADLAFQEL-RNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGSLGLFARTL-----DILFDS--QESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKPIQFTTV |
10 | 3cu7A | 0.09 | 0.08 | 2.96 | 1.00 | DEthreader | | -------------------EQTYVISAPIFRVG-ASENIVIQV-YGYTEAFDATISIKSKKFSSSGHVHLSSENKFQNSAILTIQPKQLPVSYVYLEVVSKH---FSKSKRMPITY-DNGFLFIHTDKP-V----Q-VKVRVYSLNKPAKRE-TVLTFIDP----EGSEVDMVEEIDIISFDFKIPRYG-M----WTIKAKYKSTTGTAYEDLKKKNLVATHKALLV----GEHLNIIV-TPK-SPYIDKITHYNYLILSKKIIHFGTREKFSDAS--Y-QSINIPVTQ---NMVPSSRLLVYYIVGEVSDSVWLNIEEKCGN--QLQVHLSPDADAYSPGQVSLNMATDSWVALAAVSA-YGVQRGAKKPL--ERVFQFLEKSDLGCGAGKEIL----------YFPESWLWEVHLVPKQLQFLPSLTT----WEIQGIGIS--NTGICVADTVKAKT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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