Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
| | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHSSSCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS |
1 | 1vt4I3 | 0.08 | 0.08 | 3.05 | 1.23 | CEthreader | | YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 3j3iA | 0.11 | 0.11 | 3.90 | 1.04 | SPARKS-K | | AHRVDMVRECDFNPTMNRRVSEVPLAHVFRSPPRRESTTTTDDSPRWLTREGPQLTRRVPIIDEPPAY-ESGRSSSPVTSSISEGTSQHEEEMGLFDAEERLGRGTLERIEAALEGQVAQGEVTAEKNRRITGREQITKMLSDGGLGVREREEWLELVDKTVGLKEVRSIDGIRRHLEEYGEREGFAVVRTGNSKHVRRINQLIRES--NPSAFETEASRMRRLRADWDGDGWKRWNNIPSDIQVAGKKRMCSYLAEVLHGNLKLSDATKLGRLVEGTSLDLFPPQLSSEEFSTCSEATLAWRNAPSSLGVRPFAQEDSATCGGGSFGIGKLKSLCKEFSVPK |
3 | 1vt4I3 | 0.09 | 0.08 | 3.25 | 1.95 | MapAlign | | KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ---VQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
4 | 2da7A | 0.15 | 0.03 | 1.07 | 1.44 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSG---SPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSR--SGPSSG---------------------------------------------------------------------------------------------- |
5 | 3vkzA | 0.05 | 0.05 | 2.20 | 0.77 | CEthreader | | --------------------SSYQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTG--GIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARGRRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIE |
6 | 1xi5A | 0.08 | 0.08 | 3.05 | 0.73 | EigenThreader | | TNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPVPAQPGQTSQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILFYFLGSIVVHFKYIQAACKTGRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFS |
7 | 1pufA | 0.36 | 0.08 | 2.26 | 0.91 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR---------------------------------------------------------------------------------------------------- |
8 | 6ybt2 | 0.12 | 0.10 | 3.40 | 1.01 | SPARKS-K | | ---------------------------MKPILLQGHERSI--TQIKYNREGDLLDPISVNGERLGTYMGHTGADWDTKHADNDCETGKQLALLKTNSAVRTCFGGNIIMFSTFVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVLVNVKEHSRQINDIQLS-----------RDMTMFVT----------ASKDNTAKLF---------DSTTLE--HQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGED-------GYVRIH |
9 | 4i43B | 0.17 | 0.03 | 1.15 | 0.33 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------VWDLVDERTKQRTAKAYLKVSEEEIKKFDSRIRGIL----TTFTKVAAKWNTSLISLFTYFREAIV-----ATEPLLD------------------------------------------------------------------------------------------------- |
10 | 1wygA | 0.05 | 0.04 | 1.75 | 0.67 | DEthreader | | --------LVYLRRKLGLCG-TKLGCGEGGC--------CLAPICSLVAVTTVGIGKLERIARHGSQCGTIVSMYTLLRNQPEPT-VEEIENAFQNLCRCTG----------I---GFRTFNPEDFKPLDPTQEPIFPP-L-----------GEAVDDIPRYELADTIAVPKGEAGEMALAAHKTGRPVRCMLDRDEDMLITGGN-GN--------------------PS-NTAFRFSPTAASASADLGKTPNLGYSFTNSGNPFHYFSYGVA--GLLFEELYKIPSIPIAIDAIRAARA-GDNAKQFQLDATP-KI-------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|