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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.09 | 1f88B | 0.820 | 2.61 | 0.153 | 0.913 | 0.31 | RET | complex1.pdb.gz | 39,61,65,68,69,106,110 |
| 2 | 0.07 | 3oaxA | 0.854 | 2.77 | 0.149 | 0.958 | 0.30 | RET | complex2.pdb.gz | 64,68,71,72,102,106 |
| 3 | 0.07 | 2rh1A | 0.786 | 2.93 | 0.174 | 0.881 | 0.29 | CAU | complex3.pdb.gz | 39,105,109,113,242,246 |
| 4 | 0.06 | 2z73B | 0.836 | 2.97 | 0.146 | 0.939 | 0.24 | RET | complex4.pdb.gz | 39,109,113,287 |
| 5 | 0.04 | 2ksaA | 0.861 | 2.64 | 0.162 | 0.949 | 0.21 | III | complex5.pdb.gz | 64,65,112,113,114 |
| 6 | 0.04 | 2ks9A | 0.861 | 2.64 | 0.162 | 0.949 | 0.20 | III | complex6.pdb.gz | 40,41,59,140 |
| 7 | 0.03 | 1f88B | 0.820 | 2.61 | 0.153 | 0.913 | 0.35 | UUU | complex7.pdb.gz | 39,69,70 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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