Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380
| | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC MGDQRPRDRPRSPGMDCKPWYCDKPPSKYIAKRKHRRLRFPPMDTQNWVFVKESMDSFHYGCPSPEDMLICRLNEFLLPKISHRGPQADPKSRQKKLLKKVALFSKLLPAQPAWKAFVEEAQLMAKHPLAMYPNLGEDMPPDLLLQMLKLLDPERKLEKAWAYCEGREKTIKEPTKPEPPKAPVSHHFLEPPKIRASCLKELLQEDTPSTTECVSDSLQHRYTSRKMHDFKWARDMGVDEESIRNLFDFTPKWRATYEDQQIKKIKEWVSELQYRIKLDEMDEVESSQEKDWDRKLQMAPNSYTAQCVKMRYGVWYLKPKLGKKLRSDQPLIDPKLLLEKPDEPDILDDLYGPIAFKDFILSKGYEMPGIIERLCARKGWTYDSVKTPVQRAMRLYK |
1 | 5jcss | 0.07 | 0.06 | 2.56 | 1.42 | SPARKS-K | | HQKDSSNKIYNLNMIGMRIWNVIELE-------EPSEEDLTHILAQKFPILTNLIPKLIDSYKNVKSIY--MNTKFISLNKGAHTRVVSVCERLDILFKNNINKPDQLIQSSVYDSIFSEAADCFA---GAIGEFKAL------EPIIQAIGESLDIASSRI--SLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSM---NSTLFAFTNHSLRLM-EQISVCIQMTELVGETGTGKTTVVQQLAKMLAKK-----LTVINVSQQTETYKPKTVAVPENFETLFNATFSLKKNEKFHKMLHRCFNKNQ---WKNVVKLWNEKMAQSILKITNTENENENAKK---------------KKRRLNTHE--------KKLLLDKWADFNDSVKKFEA |
2 | 1vt4I3 | 0.03 | 0.03 | 1.79 | 1.26 | MapAlign | | ---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----- |
3 | 1vt4I3 | 0.03 | 0.03 | 1.88 | 0.80 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
4 | 6cf8A | 0.06 | 0.06 | 2.42 | 0.63 | EigenThreader | | KIIPLNPKYAKCYTYTANTILDANLTCQSVRLNSLVFIASLNSKDRTTL--AQTFKNQRPDLTNLLLAF---NTSDEDINGFFKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKENVSEDSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKN-----NEEDLKTLSQSSSLNIYSLYAKELTNTPFPKIESLNPSDANASQLDVLAKEFDTQE--TLPIYAYILERKNNFKKHYFIMPYYDNIK-----------DYNKTRQALILAIARQESRFIPTAISVSYALG--MMQFMPFLANHIGEKELKIPNFDQDFMFK------PEIAYYFGNYHLNYLESRLKSPLFVAYAYNGGELVPYQESRIYGKKVLANYI |
5 | 5kcs1w | 0.11 | 0.11 | 3.81 | 0.50 | FFAS-3D | | SGTELGSVDKGTTRTDNTLLERQRIQTGITSFQWENTKV-NIIDT-------PGHMDFLDGVQAQTRILFHALRKMGIPTIFNKIDQNGIDLSTNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGENEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVQREMLLDALLEISDSDPLLRYYVDSTTHEIKVQME-------VISALLQEKYHVEIEITEPTVIYMERPLKNFWASIGLSNQSFEQGLYGWNVTDCKICYYSPVSTPADFRMLAPIVLEQVLKKAGTELPRAYNDAPKYCANIVDTQEIPARCIQEY-- |
6 | 4btgA | 0.11 | 0.10 | 3.62 | 1.23 | SPARKS-K | | NGSARGLTQAFAIGEL-----KNQLSV----GALQLPLQFTRTFSASMTLVGKGNIDPVGGALSVDELVTACNPEKLTAYITGSSNRAIKADAVGKVPPTEQLRSEHELFHHITTDFVCHVLSPLGFAYVYVGRTATYPNFYALVDCVRASDLRRMLTALSSVDSKMLQATFK-----------AKGALAPANAATTAF------ERSRGNFDANSPSTPKELDPSAR---LRNTNGI--DQLRSNLALFIRAEVIFSDE-ELSSTIIPWFIEAMSEVSPFKLRPINETTSYIGQTSAIDHMGQPSHVVV-YEDWQFA----KEITAFTPVKLANNSNQRDVEPGISDRMSATLA----PIGNTFAVSAFVKNRTAVYEAQRGTVNDPMVAIAALRT |
7 | 5crjO | 0.10 | 0.04 | 1.40 | 0.62 | CNFpred | | ---------------------------------------------------------------------------------------------------------------QDLKMFLLSKGASKEVIISRYPRAIT-RTPENLSKRWDLWRKIVTSDLEIVNIL------------------------------ERSPESFFRSN------------NNLNLENNI---KFLYSVGLTRKCLCRLLT------------------NAPRTFSNS--------------------------------------------------------------------LDLNKQM--VEFLQAAGLSLGHDPADFVRKIIFKNPFILIQSTKRVKANIEFLR |
8 | 7dxjA | 0.06 | 0.03 | 1.47 | 0.67 | DEthreader | | -QSVRNLMDSNLPRLQLEL------------APRSLRAALWRFAELAHL-----------------PKIMASFGICQHPLLQSPPELQTAVGISSPHCVRLSALGGNVLSDILNYIDH----------------------RTTGNTFSLADCIPLLRKLVQLIIDVLLRNSSYSLKEKEFIRIWT-RTQ---------------------------------------------------------------------------WATLLGVLAAITSLVLAMLQYKLGPVGLHQLVMCAMCVSLKLVD-----------------ESVIVAMEQDIMNKVIGEFLPAVSCFVSAAILPHVIS----LEQVDVNLFCLVAT----------------- |
9 | 1vt4I | 0.03 | 0.03 | 1.88 | 1.26 | MapAlign | | -GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
10 | 4bujB | 0.15 | 0.13 | 4.35 | 0.74 | MUSTER | | SSLPASNNVSSNRNLE----------TNHYVKLVPDNLLA-------WK----GLFLLFRT----TEVVPDILSYDEYFDLCGQYADALLKQEQVELINDIKLLKKTHPDC-------QKAFYQHLKPGSLMAETIGRTPQDALLNLIKILSNIETTEIGKTLSQNRLKLKASDPDYQIKLNSFSWEIIKNSEIDQNQLVNILADDQKRSEIENQWLEYRIKVDVKKDFFTKVKEM---EDMVLVNHQSLLAWQKYFEWTDYEDLDNMDAPIIKYFKKFPKDPWLSSKLSKYDIKSLESDDIEIGLLEE---EV-----TVLTENIVKCK-NNIQYYLLTKEYEAALPYI-GISLIAYNIKDLGVHLPLTKREFSLDLATYVDAPK--HNAALKLYD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|