Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCSCCSSSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHSCCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCSCCCSCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHSSSCCCCCCCCCCCCSSSSSSHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCC MEEENATLLTEFVLTGFLYQPQWKIPLFLAFLVIYLITIMGNLGLIAVIWKDPHLHIPMYLLLGNLAFVDALLSSSVTLKMLINFLAKSKMISLSECKIQLFSFAISVTTECFLLATMAYDRYVAICKPLLYPAIMTNGLCIRLLILSYVGGLLHALIHEGFLFRLTFCNSNIIQHFYCDIIPLLKISYTDSSINFLMVFIFAGSIQVFTIGTVLISYIFVLYTILKKKSVKGMRKAFSTCGAHLLSVSLYYGPLAFMYMGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKRNDV |
1 | 2ks9A | 0.17 | 0.16 | 5.29 | 1.33 | DEthreader | | --------TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHP-L-QPRLSATATKVVICVIWVLALLLAFPQGYYS-TT-ET----PSRVVCMIEWPEH-P-NKI-YEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWSDRYVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYNPYFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF |
2 | 4n6hA2 | 0.14 | 0.13 | 4.50 | 2.06 | SPARKS-K | | -----------SPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-LPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDG---------AVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCG |
3 | 3dqbA | 0.15 | 0.15 | 4.97 | 0.63 | MapAlign | | FSNKTGVVRSPFEAPQYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK--PMSNFFGENHAIMGVAFTWVMALACAAPPLWSRY---IPE---GMQCSCGI--DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAATQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
4 | 3dqbA | 0.16 | 0.15 | 5.15 | 0.38 | CEthreader | | SNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG----MQCSCGI---DYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
5 | 6me2A2 | 0.16 | 0.14 | 4.63 | 1.42 | MUSTER | | ------------------RPSWLASALACVLIFTIVVDILGNLLVILSVYRNKKLRNAGNIFVVSLAVANLVVAIYPYPLVLMSIFNNGWNFGYLHCQVSAFLMGLSVIGSIWNITGIAIDRYLYIH-SLKYDKLYSSKNSLCYVLLIWLLTLAAVLPNLRAG-TLQYDP----RIYSCTFAQ---------SVSSAYTIAVVVFHFLVPMIIVIFCYLRIWILVLQVRGID--FRNFVTMFVVFVLFAICFAPLNFIGLAVMVPRIPEWLFVASYYMAYFNSCLNPIIYGLLDQNFRKEYRRIIVSLCT |
6 | 6kp6A | 0.17 | 0.15 | 5.07 | 1.33 | HHsearch | | --------------------TVEMVFIATVTGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVVGKRT--VPDNQCFAQFL------S---NPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSRVHAARERKVTRTIFAILLAFILTWTPYNVMVLVNTFCQSPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ-- |
7 | 3emlA1 | 0.15 | 0.13 | 4.46 | 2.22 | FFAS-3D | | -----------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMN---------YMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL |
8 | 2ks9A | 0.16 | 0.15 | 5.15 | 0.93 | EigenThreader | | SDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP--RLSATATKVVICVIWVLALLLAF-----PQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIY---FLPLLVIGYAYTVVGITLWASEIPSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF |
9 | 4ww3A | 0.17 | 0.15 | 4.90 | 1.76 | CNFpred | | ----------------------VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE----GVLCNCSFDYISR-----DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNH-GANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT |
10 | 6me6A | 0.16 | 0.15 | 4.96 | 1.33 | DEthreader | | TDNLKIAEKTNAQ-GDGARPSWVAPALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNAGNLFLVSLALANLVVAFYPYPLILVAIFYDGWAFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYICHSMAYHRIYRRWHTPLHICLIWLLTVVALLPNFFVGS-LEYD----PRIYSCTFI-QT------A--STQYTAAVVVIHFLLPIAVVSFCYLRIWVLVLARMKKLSDLRSFLTMFVVFVIFAICFAPLNCIGLAVAPAPIPEGLFVTSYLLAYFNSCLNPIVYGLLDQNFRREYKRILLALWN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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