Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
| | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC MPRAQLPEDSSAVDMDILFPLDSVIGTELCPSPIPQIIHFVLFVVFSLVILIILRLYIPREPSSVPPREEDSENDQAEVGEWLRIGNKYITLKDYRILLKELENLEIYTFLSKKCLKKLSREGSSHHLPRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPLAPLASMPSSVPKTSVESLGSPSSLSSSKPREPLCPLKHPSHQPPASTLSPNPTSSTESLGYLSSLSSSQPPEPLRPLKHPSHKPRGRSLPRRRNPGWVSWSDSMQADSETDTIICPMCKAPERSCPHTWWVPSSPRVIRGVGRCSDPNLGLSWRQEAARAWCHCTSSQFPFKHPNLPTHLPKASF |
1 | 4nl6A | 0.09 | 0.07 | 2.71 | 1.31 | SPARKS-K | | -----MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKN-----------------------TAASLQQWKVGDKCSAIWSEDGCIYPKRETCVVVYTNREEQNLSDLLSPICEVANN---IEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPG----PRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPIC-------PDSLDDADALGSMLISWY------MSGTGYY--------------------MGFRQNQKEGRCSHSLN---- |
2 | 5wlcLO | 0.07 | 0.07 | 2.83 | 1.00 | MapAlign | | TLLISIDEDGRAILVNFKARN-VLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLAATTFNGHRDYVMGAFFSHDQEKIYTVSKDGAVFVWEFTKRKYSWRITKKHFFYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIH |
3 | 2cf2C | 0.05 | 0.05 | 2.23 | 0.52 | CEthreader | | GRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAFVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYR---IHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF----------------------- |
4 | 6gmhQ | 0.04 | 0.04 | 2.15 | 0.68 | EigenThreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEA |
5 | 4nl6A | 0.11 | 0.08 | 3.05 | 0.64 | FFAS-3D | | -----VPEQEDSV----LFRRGDDSDIWDDTA--------------------LIKAYFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTA-------------------ASLQQWKVGDKCSAIWSED--GCIYPATIASIDFKRETCVREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSML---------------------------------ISWYMSGYHTGYYMGFRQN--QKEGRCSHSLN--- |
6 | 4btgA3 | 0.12 | 0.10 | 3.72 | 1.29 | SPARKS-K | | LKNQLSVGAQLPLQFTRTF-SASMTSELLVGRTATYA------VVSSVLTILGRLWS----PSTP------KELD---------PSARLRNTNGID---QLRSNLALFIAYQDMVKQRGRAEVIFSELSSTIIPIEAMSEVSPFKLRPINETTSYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSN--QRFLDVEPGISDRMSATLAPIGNTR----GTVNSNGAEMTLGFPSVVYALDRDPMVAIAALRTGIVDESLEARVAHNPEVVVSEHQGVAAEQGSLYLVWNVRTEIPVGNAIEGGSIRTPEPL----EAIAYNKPIQPSEVLQAKVLDLANHTTSI |
7 | 4u95A | 0.14 | 0.03 | 1.16 | 0.60 | CNFpred | | -----------AVPVVLLGTFAVLAFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEE---GLPPKEA-------------------TRKSMGQIQGALVGIAMVLSAVFVPMAFFG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6reyc | 0.05 | 0.03 | 1.39 | 0.67 | DEthreader | | -------------------WPGGLLESMMQGAIPSVENILK-----M--FDV------------------------------KLWF-----WWEQLVNLFARHAVIILRLPNVIVLLARPLVIPPVLERTYPALE-TLTEPQLTLSCVIGVARSLKSME--------------------------RPDR-F----YLLGNSVCNLHDIVWPAIVSSSQAMS--LEKPSIVRLF----------------VDTLLDPRAIFVLRMAISAVAG--------K--EKTHWGYYTWPKNMVVSRDPQEWRVPELLHRLLSVLTYIFMIDVSLVSFSTGLLYNLFI------------ |
9 | 5oqlO | 0.07 | 0.06 | 2.60 | 1.00 | MapAlign | | KWLLSGGKDRSLWGWSLRRDG--------QSAELSQGAIRKKARKMLLAGTTTLEDLKAPEITCIASSLNRDGGMGAIPGKQMIWDKNAELSGNTGWESVVTAHKDDPYARTWFWGRRRAG-RWAFKTGDGEPVSTVAISSCGTFALVGSTGGSIDMF------------NLQSGRHRQRFPSRFAPGTGRHTNAVTGIVVDPLNRHVVSCSLDGKV------KFWDFITGNLVDEIDWAPMTKIIGCRYHPGNDLIAFACDDRSIRVVDIETKNTIREFWGCRGDINDFCFSPDGRWIVAASQDS--IIRVWDLPTAHLIDAFRLEQPCTALAFSHTGEYLAGAMEGSLGVQ |
10 | 2nbiA1 | 0.12 | 0.12 | 4.21 | 0.87 | MUSTER | | SDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFERPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVECPIDACFLPKSDSARPPDNVLPFPNNIGCPSCCPFEFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|