Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCSSCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC KQTVKEPPPVQKPEKEPEQEKPPSPPPPPPPPPPPLPPPPPAPVNTCPTVIICCCGCQGVGGMRRIEGNLDTFCDLSHASCHQVPWMCCQSRDQGRYLSLALAQSQYAQAPCCPRICFPHSQECLSLPQAPCSPRMCLRHSRECLALKQARCSPNICLRHSQHSRECLARKQAPCSPRICLRHSPEYFSQAQTLCNPKSCLQPSRECLPLTCSSRCRLPPARCLRPPSRMLPLLSPLLRHTAEPPLSLPPSEPNF |
1 | 6w09E1 | 0.11 | 0.08 | 2.84 | 0.61 | CEthreader | | ----------------------------------------NFNVYKAIRPYLAHCPDCGEGHSCHSPVALERIRNEATDGTLKIQVSLQIGIKTDDSHDWTKLRYMDNHMPADA-----ERARLFVRTSAPCTITGTMGH--FILARCPKGETLTVGFTDSGKISHSCTHPFHHDPPVI---------------STYAQSTAATAEEIEVHMPN--HKKWQYNSPLVPRNAELGDRKGKVHIPFPLA-------- |
2 | 5cqrA | 0.07 | 0.07 | 2.85 | 0.60 | EigenThreader | | KEEDVTKTMYPAPPDGNQGNAPSDPDAVSAEEALKYLLHLVDGTYDSQK------EYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALS---AFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECA----QDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETN |
3 | 1vowD | 0.14 | 0.12 | 4.16 | 0.39 | FFAS-3D | | ----KKYRPYTPSRRQMTTADFSGLTKKRPEKALTEALPKTGGRNN-----------RGRITSRFIGGGIDKVAAIEYDPNRSARIALLHYADGEKRYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHLVPGKGAQLARSAGTSVQVQGKESDYVI-------------VRLPSGELRRVHSECYATIGAVGNAEHKNIVLGKAGRSRWLGRKPHQRGSAMNPVDHPHGGGEGRTGAGRVPVTP-- |
4 | 6ybt2 | 0.07 | 0.06 | 2.64 | 0.94 | SPARKS-K | | IVNVWYSVNGERLGTYMGHTGAWDTKHDCETGKQLALLKTNSAVR---------TCGFDFGGNIIMFSTFVSFFDLRQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHEGELNQYSAKSGEVLVNVKEHSRQIDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFHFGPINSVAFHPDGKSYSSGGEDGYVRIH---- |
5 | 1frvA | 0.07 | 0.02 | 0.65 | 0.41 | CNFpred | | -----------------------------------------------AVIAIGTCATYGGQAAKPNPTGTVGVNEALGKLVKAINIAGCPPNPM--NFVGTVVHLL----------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 5efvA | 0.05 | 0.04 | 1.62 | 0.67 | DEthreader | | -----------------------VTGYGDTLVFTVAVDHKRAYRFEQEPE------------------FI-TDL-SP--NAVMQSFWVD-----PRTKIIYMTLSRLLVKNGGHGHNAYRYLWIYSAVLNNDRYTSAIYNPNLMIFRREYKPRSLNFVEVRVLYQMDIPMEYTSPMQGITYDAGILYWYEGLT--G--RH---------IYSIG-QRGVNQFLKN-IA-PQV-SMT------------------- |
7 | 6chgD | 0.07 | 0.06 | 2.40 | 1.00 | MapAlign | | -----------------------------------------------PVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLVCWSNDGRYLWSSGWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTVVPTAYVLIITGTSKGWINAFQLDRCCYEEKIANANIKQIIISPSGTRIAINGSELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLWEGSLVRVLEGADEELLDIDW |
8 | 2nbiA1 | 0.19 | 0.19 | 6.08 | 0.71 | MUSTER | | PQNINCPRRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPPFECSPDNPMFTPSPDGSPPNCSPTMLTPQPSTPTVITSPAPSSQPCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCLPTPQFECRPNPMFTPSPDGSPPICSPTSPEPSSQPSDEVIEECPIDACFLPKSDSARPPDNVLP-FPNNIGCPSCCPFECSPDNPMF |
9 | 6w09A1 | 0.16 | 0.04 | 1.17 | 0.57 | HHsearch | | --------------------------------------------TVIPSPYVKCCGTAECKDKSLPDYSCKVFTG-V------YPFMWGGAYC-----FCDTENTQLSEAH--------------------------------------------------------V--------------------------------------------------------------------------------------- |
10 | 6lnwA1 | 0.04 | 0.04 | 1.95 | 0.43 | CEthreader | | --MYYFIPAWYGSERTWHADITPWYFSHFRLEFDDTFHQIRLFQEQDIDSRLLVLAYQPHLRYFLYRHGVLEMDTYSVFDVMQDFHNLHTQVLSIRDIEWDDDCEFIYSPFTIIVQKNGKKFAKVEHGVEGFISDIQYFEPNGHMHHIVDDRGFVSSIIFFEDGQAAYQEYLNLKGEWQFRERLKEGGQVEVNPILGYRFKMLTYQNMGDLVAEFFENYLQTYVKDQDIFMLPSHSHHDQLVLDRLPSTNPKLLS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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