Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HSPPATVEAATSRASPPALLPGPAPRGDRPELLTPSSLHYSTLQQQQQRTREWVARHPQVPEARDQGPIRAWSVLPDNFLQLPLEPGSTEPNSEPPDPCLSSHSLFPVVPDESWESWAGNPSLTVFRSIRCQLSLQDLDDFVDQESDGSEESSSGPKDSPGASEEGLQVVLGTPDRGKLRNPAGGLSVSRKEGSPSRSPQGLRNRGDGHISQQVPAGANGLAGHPLKPLPWPVPKLRRSLRRSSLAGRAKLSSSDEEYLDEGLLKRSRRPPRSRKPSKAGTAPSPRVDAGLSLKLAEVKAVVAERGWRHSLWVPSGEGSAALAPHRTSEHKSSLVPL |
1 | 5jcss | 0.06 | 0.06 | 2.58 | 1.17 | SPARKS-K | | PILTNLIPKLIYMNTKFISLNKGAHTRVFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKA--LEPIIQAIGESLDIASSRISLFLTQHVPTLENLDKEKLNIQKKSMNSTLFAFTNHS-------LRLMEQISTVVQQLAKMLAKKLTVINVSQQTETDLLGGYKPKTVAVPIQENFETLFNATFSLKKNEKFHKMNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIRAGEWTLESISDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMPA |
2 | 2pffB | 0.19 | 0.17 | 5.56 | 1.03 | HHsearch | | KILPEPTEADDEPTTPAELVSSLVEPSDQLEGNDIHAL-AAKLLQTKELIKNYITARI-MAKPFDKSNSALFRAVGEGNAQLVTDDYFEETLSELIRTTL-DAEKVF-TQGLNILEWLENPSNTYLLSIPISCPLGELRSYLKGAT--------------GHSQGLVTAIAETDSWESFFVSVRKLGVRCYEAYPSNLTQEYVNKTNSHLSLVNG--AKNLVGLDQSRIPFSERKLKFFLPVASPFHSHLL-VPASDLINKDLVKNNVS-------FNAKDIQIPVYDTFDGSDLRVLSGSIVDCIRLPVKWETTTQFKLDFGPHRNKDGTGVRVIV |
3 | 6vyvE | 0.07 | 0.07 | 2.77 | 0.49 | CEthreader | | SPVAIEKIRDEAPDGMLKIQVSAQIGLDKAGTHAHTKIRYMAGHDVQESKRDSLRVYTSAACSIHGTMGHFIVAHCPPGDYLKVSFEDADSHVKACKVQYKHDPLPVGREKFVVRPHFGVELPCTSYQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGR-----------TIRYNCTCGRDNVGTTSTDKTINTCKIDQCHAAVTSHDKWQFTSPFVPRADQTARRGKVHVPFPLTNVTCRVPLARAPDVTYGKKEVTLRLHPDHPTLFSYRSLGAEPHPYEEWVDKFSERIIPVTE---EGIEYQWGNNPPVRLWAQL----------- |
4 | 2xcoA | 0.05 | 0.05 | 2.30 | 0.53 | EigenThreader | | DSRTGKILNLDRILNNNEIRQMITAFGTGLAKARYHDADVDGAHIRTLLLTFFYRFM----------RPLIEAGYVYIAQPPLYKLTQKQKYYVYNSIARYKGLGEMNADQLWETTMNPEHRALLQV------MSVIVAR------ALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSHPHGMAQDFSYRYPLNFGSMDGDGAAAMRYTKITLELLRDINKDTIDVLPARFPNLLANGASGGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGRAHILEGLRIALDHAMESLQQRFKLSEKQAQAILDMRLRRLTGLE |
5 | 5kcs1w | 0.13 | 0.13 | 4.52 | 0.47 | FFAS-3D | | AGKTTLTESLSGAITELGSVDKGTTRTDNTLLETPGHMDFLAEVYRQTRILFHALRKMGIPNKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDDDLLEKYMSGKSLEYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSEYTKKRQRLAYIRLYSGVHLRDSVRVSEKEKIKVTEINGELCKIDRA-YSGENEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKKYHVEIEITEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSPLPLGSGMQ-- |
6 | 6em5m | 0.12 | 0.11 | 3.97 | 1.08 | SPARKS-K | | EQTDDSINPYEPLIDWFTRHEEVMPLTAVPEPFVPSKNEAKRVMKIVRAIRELKEMKEKEKIENYQYDL--WG---DSTETNDHVMHLRAPKLPPPTNEESYNPPEEYLLSPEKEAWENTEYS-------------------ERERNFIPQKYSALRKVPGYGESIRERFERYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIYAGHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILTGREVTTLIDDEENPDYHIECIEWNP--DANNGILAVAVGENIHLIVPPIFGYDIENNGKTKIEDQWNKPSQKQLEKDICITISCKKTVKKL |
7 | 5ja1A | 0.11 | 0.03 | 1.07 | 0.33 | CNFpred | | ---------------------------------------LIQHAERLKMLIAQFAADPALLC-------GDVDIMLPGEYAQ--------AQLNATQVEIPETTLSALV----AEQAAKTPDAPALADARYLFSYREMREQVVALAN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 5ikyA | 0.10 | 0.06 | 2.34 | 0.67 | DEthreader | | -------------AVPKFLDPLEPGYDIHTYLSFQPGKARSPYLPIGIDASREVITLLDYGHAQLAPDVAS-E-MLVAAVDQYHRDSGDTS--DD--S----------IDVPTRKAIAKLLQAFQLVIRVVDAENNVVNLGLRQYSMAL-YH-------CGPLW-T-VL-E-T--VRRD--------------------------------GAQLFHGFVAQIAADPLRLL-AIT--HSGRRDDGETVIEASMLH------------HSSARSAGTTSRH--V-Q--PGEADLQHCLHPDYRYD---L--------SIRRYAASPWL---------- |
9 | 2pffB | 0.07 | 0.07 | 2.83 | 0.89 | MapAlign | | ----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRILVEVVFYRGMTMQVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD |
10 | 2nbiA | 0.14 | 0.14 | 4.85 | 0.87 | MUSTER | | PSDLNPSSQPSECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTGRPDCDVLPFPNCCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPPYGDSSRPLDCTDPAVNRPDCDVLPTPQNAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDVIEECPIDACFLPSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPPSPDGSPPNCSPTMLPSPSPSAVVPL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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