Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCSSSSSSCCCCCCSSSSCCCCCSCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCSCCCCCCHHHCSSSSSCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHSCCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC VLPLRLQNRLFVSWRSPTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIGVPSVEFLESPITAVDSPFLKAFQASSSSSPETLTDVGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS |
1 | 1cvmA | 0.06 | 0.06 | 2.46 | 0.61 | CEthreader | | SNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYIS------GKKVRAFKMNSQTEGMAADDEYGSLYIAEEDESAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAIYERQGQNKYVADFQITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVPWERIADKIGFHPQVNKQVDPRKMTDRS |
2 | 6u9vA | 0.05 | 0.04 | 2.12 | 0.53 | EigenThreader | | LVHGIFDQGNSFFVMT-----NYLKLCPEYPSRGKQCQGCIKGW---MDPQSKGIQTGRCIKTCEIFAWCPAEEGKEAPRPALLRSAENFTFHKTWNPQCPENFTEVAVQGGSLFPGYKAFGVRFDIDLSYFGLATVCIDLIINTYASCCEPCAVNEYYYRKKCEPIRPQTDFLELSQLPENRRAL-----EELCCRRKPGQCITTSELFSKIVLSREALQLLLLYQEKLRHCAYRSYATWRFVSQDMADFAIL |
3 | 3jcrV | 0.13 | 0.10 | 3.39 | 0.39 | FFAS-3D | | --------------------------------CPY--------LDTINRSVDFEKLCSISLSHINAYA--------CLVCGQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCPDNYEIIDSSLEDFTKQQIANLDKQAKLSRAYDGLPGIVGLNNIANAVLQA-LSNVPPLRNYFLEEDNYKNIKRFGELMRKLWNPRNFKAHVSPVLCSKKTFQITKQGDGVDFLSWFLNALHSA------------------ |
4 | 7aavA | 0.11 | 0.11 | 3.94 | 0.99 | SPARKS-K | | RLFCRYIDRIHIFFRFTGYNNKKC-WPRDARMRLHDVNLGRAVFWDIKNRLPSVTTVQWEN----SFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHK---DGVWNLQNEVTKERAQCFLRVDDESMQRFHNRVRQITFTKIVAVVNTQELLDLLVKCENKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQRWSKQTDVGITHFRSGMSHEEESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDS |
5 | 4a0pA | 0.10 | 0.04 | 1.33 | 0.55 | CNFpred | | --------RSIERANKTSGQNRTIIQGHLDYVMDILVFHS----------QSGWNECASSNGHCSHLCLAVPV--GGFVCGCPAHYSLNA--DNRTCSAP-------TTFLLFSQ-----KSAINRMV------------------------------------------------------------------------------------------------------------------------------ |
6 | 2eabA1 | 0.07 | 0.06 | 2.22 | 0.83 | DEthreader | | GGYNWQQTTLPFG-N----GKIGGTVWERVIYLDYG--TVTEYRR-DLNLSKADVTFKHDG-VTYTREYVAMYNSQIKVVLEGTLSEGSD----LKV--SDAKA-VTLYIAAAVVDAAYVKHIH-YLVYKYGRYTIGSSNQGIWSVT-AGD-----NTPWGSDF-HMNVNL-----------------------------------------NMGELAE-P-LIEYVEGLVKPGRVTAKVGAETTNPETTPIYG |
7 | 1vt4I3 | 0.07 | 0.06 | 2.67 | 0.97 | MapAlign | | -----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-- |
8 | 2zu2B | 0.11 | 0.11 | 3.94 | 0.49 | MUSTER | | AQPSGFVEKCVVRVCYGNTLNGLWLGDIVYC--RHVITTSAIDYDHEYSMRLHNFSIISGTAFLGVVGAT-MHGVTLK------KVSQTNMHTPRHSFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRACGSPGNGEVEFVYMGSHVGSSFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGNGEDAFSILAAKTVERLLHAIQVLNNGFGGKQILGYSS |
9 | 1vt4I3 | 0.17 | 0.09 | 2.99 | 0.63 | HHsearch | | -----------------------------------EYALHRSIVYNIPKTSDDLIPP---------Y----------------------------------------------LDQYFYSHIGHHLKNIEHPERMTLFRHDTAWNASSILNTLQQLKFYKPYICDN----D--PKYERLVNA-ILDFLPKIEENLI-------CSKYT-DLLRI-ALMAEDEAIFEEAHK----------QVQRGGGGGGGGGG |
10 | 3k71G | 0.11 | 0.11 | 3.87 | 0.57 | CEthreader | | APRYQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAQTRGGQVSVCPLRRWWCDAVLYGEQGHPWGRFGAALVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLAVGARGQVGVSMQFIPAEIPRSAFECREQVVSEQTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSLSRVRVLGLKAH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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