Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCHHHHHHHHHHHHHHHHHHHSSSCCCCCCCCCHHHHHHHHHHCCCSSSSSSCCCCHHHHHHHHHHHHHCCCCCCCCSSSSSSSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHSSSSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC MEAGPPGSARPAEPGPCLSGQRQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALGHAGRHLQQIILDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
1 | 6k8sA | 0.07 | 0.07 | 2.75 | 1.17 | DEthreader | | --YSVERSTT-------DQMRGKTVWIIGEH--LV-DYLAETARAFIEDCHAANVVLITRVSDIEAAMDEALSGRPTTILSTPALDNLTHHFRVSR-RA---SLYDDCQLVLTSPDVAMDSPAFALANFIKTTLHAFTATLAENVPVNQINLTREPRDLDEHLEEVRRFARAVLLVGAPLPDARIYRGMSM |
2 | 4cvhA2 | 0.91 | 0.83 | 23.25 | 2.23 | SPARKS-K | | -----YKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEAL------------DQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
3 | 4cvhA | 0.99 | 0.82 | 23.03 | 0.55 | MapAlign | | --------------------ISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEAL------------DQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
4 | 4cvhA | 0.88 | 0.82 | 23.13 | 0.66 | CEthreader | | WKVTYKRD-LYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALD------------QCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
5 | 4cvhA2 | 0.91 | 0.83 | 23.25 | 2.05 | MUSTER | | -----YKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEAL------------DQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
6 | 4cvhA2 | 0.91 | 0.83 | 23.25 | 7.41 | HHsearch | | -----YKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEA------------LDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
7 | 4cvhA2 | 0.98 | 0.82 | 23.04 | 2.52 | FFAS-3D | | ------------------ERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEAL------------DQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
8 | 4cvhA2 | 0.87 | 0.77 | 21.82 | 0.53 | EigenThreader | | -----YKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALDQ------------CYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNS---GLIGQL |
9 | 4cvhA | 0.92 | 0.83 | 23.23 | 1.41 | CNFpred | | --------DLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEAL------------DQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
10 | 6k8sA2 | 0.07 | 0.06 | 2.57 | 1.17 | DEthreader | | -----------------DQMRGKTVWIIGEH--LV-DYLAETARAFIEDCHAANVVLITRVSDIEAAMDEALSGRPTTILSTPALDNLTHHFRVSR-RA---SLYDDCQLVLTSPDVAMDSPAFALANFIKTTLHAFTATLAENVPVNQINLTREPRDLDEHLEEVRRFARAVLLVGAPLPDARIYRGMSM |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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