Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CCCHHHHHHHHHHHHCCCCCCCCCCCSSSSSCCCCCCCCCCCCCHHHHCCCCCCCCCCSCCCCCSSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCCCCCCCCC MLHVLASLPLLLLLVTSASTHAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLGPGASRIYPVAAVMITTTMLMICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPISDHTLLRGVLHMLDALLVHIEGHLRHLATQRQIQIKGTSTQSG |
1 | 3hdjA1 | 0.09 | 0.05 | 1.94 | 0.48 | CEthreader | | AVTPQAAQEVLHAAFLDFGRGSAAQRTLGAVIPGQGVAGAKVYTTIKGQFQFVILLFSAADGRPLATCVGLEDVALAGYAYRRLAAQRGWPAP------------------------------------------------------------------ |
2 | 6nbqG | 0.06 | 0.05 | 2.22 | 0.47 | EigenThreader | | TITFFALAAAVIIAALGVVLLDNVVYSAFLLGGVFLSIAGLYILMNADFVSAAQILIYV-----GAVNVLILFAIMLGVFALLTKMILQTPTPDSITTIGQHFFSDFLLPFELASVLLLMALIGAVVLAR-----------------RELVLEPEPILG |
3 | 5vhxE | 0.15 | 0.13 | 4.23 | 0.50 | FFAS-3D | | LLAVALNLLALLFATTAFLTTYWFQLRRFHTGI----W-------YSCEEGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELLHSSDG----------------LKLNAFAAVFTVLSGLHMMYTQVFQVTVSLGPEDWRPHSWDYG |
4 | 6tgbB4 | 0.11 | 0.10 | 3.65 | 0.65 | SPARKS-K | | QLYVLQVLTFNDRMMTKMDPQDQAFELRRIAFDRYKKLGFINHVNDFTQTPPGMLAENSSREDKHECPF------GRSSIELTKMLCEILKVGELPSE----TCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMNKVMQVVKEQVMRALTTKPSSLD |
5 | 5xtcr | 0.13 | 0.09 | 3.04 | 0.54 | CNFpred | | LLKLGGYGMMRLTLILNPLTKHMAYPFLVLSLWGM------------------IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSF-----------------------TGAVILMIAHGLTSSLLFCLANSNYERTHSR------------ |
6 | 5t6qA | 0.09 | 0.06 | 2.38 | 0.83 | DEthreader | | DDSYYVAVSELTLLMQQRISYHNDFIY--W-----------------L----------------TPHGRRFLRACRAAHDHTDRVIRQRKAALQDEK-EREK-------GESGVQLSDTDLRAEVDTFFEGHDTTTSGISWFLYCMALYPE-------- |
7 | 1l8nA | 0.08 | 0.08 | 2.94 | 0.63 | MapAlign | | ISWMLLSSWRIYENYGPNVDGYEYSHWGTYHYADRDGIGVDRTVATGTGYTLFFHHVPYTHRLHSGETVIQHIYNTHFEGVEQAKQLRKRW---------------EQLKGKIDEKRYHDVLERLTIQVEHAKEWRDVINTYFYRKSGIDDQYGRKIY- |
8 | 6hcyC2 | 0.15 | 0.13 | 4.45 | 0.52 | MUSTER | | -LFPMWRFPFYLSAVLCVFLFFY---CVIRDVI-------YPYVYEKKDNTFRMAISIP----NRIFPTALTLLALVYLPGVIAAILQLYRGTKYR----RFPDWLDHWMLCRKQLGLVALGFAFLHVLYTLVIPIYYVRWRLGNLTVTQAILKKENPF |
9 | 2micA | 0.15 | 0.04 | 1.27 | 0.43 | HHsearch | | ----------------------------------------------------------MTRGTDNLIPVYCSILAAVVVGLVAYIAFKRWNSSKQNKQ------------------------------------------------------------- |
10 | 5doqA2 | 0.09 | 0.08 | 3.16 | 0.46 | CEthreader | | SVASALVGDLSGKFLAEYQPEKLAAAEWHFETSSHAPLFGTLEEDNEVKYALEIPYALSILAHNHPAAVVTGLNDIPEDERPPLYIHYLFDVMVTIGVFLMVVAAVYWLGSIFRWKWTAKNWFFGLLVAGGPLAMIAIEAGWYLAEVGRQP-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|