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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.43 | 2h3n0 | 0.930 | 0.72 | 0.824 | 0.962 | 1.61 | III | complex1.pdb.gz | 10,12,13,23,25,27,29,54,56,57,59,69,71 |
| 2 | 0.26 | 1pg74 | 0.927 | 0.69 | 0.693 | 0.953 | 0.84 | III | complex2.pdb.gz | 12,13,14,15,17,18,21,25,27,29,31,32,54,56,57,61,68,69,71,99 |
| 3 | 0.13 | 1mco1 | 0.821 | 2.28 | 0.854 | 0.962 | 0.70 | III | complex3.pdb.gz | 8,14,15,17,27,28,29,30,31,56,57,58,59,60,61,62,67,68,69,70,71 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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