Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440
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| SS Seq | CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC MADSVLNHSWPAFSKLWLKRWAFKRGSEPKSCVQPFDSGAVASATKSSSGSWKPENPDFFSAMGDDQEDDFPRRLSESMEDLSLDLGALQGSEYLQDLGLGAPSHSQPGETPDSRPTGEEPGRDSLFSSLAGSQDLSRRRSWERSRSCSESWRRLSLDASAVDEEPCLPRTLASLALNLPGGGLKTWTQGCLSGGGTPAESPGKECDSPKKRGRSRSVPVSFYEIRSPEISPGLEVPTPPVQGLEPPVLECMEKDHVEPDHVLIVQQVLQELRQYHGARQRACMSASPGGAHSNLTWFEFLSESEDGAGKNEKSDKSTSVKRRLSCLRSRVTRQKEKGKSPAHLKDKGQDARERRECVNGHQLLQGTFSGPSSCPLCGKPFLSSGKSGGPIHPPGGQPLSLLHVLSIILLGSLLMCASSFCFALSSAAPWREPGISPWAQGPLG |
1 | 4btgA | 0.13 | 0.12 | 4.20 | 1.40 | SPARKS-K | | ---------GFNLK---VKDLSARGLTQAFAIGELKNQGALQLPLQFTRTFSASMTSELLWEVGKGNIDPVQAGGALSVDELVNQQSTACNPEIWRKLTAYITGSSNRAIKADAKVPPTATLAPSEFVCHVLSPLAAYVYRVGRTATYPNLRRMLALSSVDSKMLQATFKAKGALAPALANAATTAFERSRGNFDSTPKELPSARLRNTNKQRGRAEVIFSDEELSSTIIPWFIEAMSEVSPFKLRPINETTSYHMGQPSHVVVYED-------WQFAKE--------------ITAFTPVKLANNSNQRFLDVEPG--ISDRMSATLAPI-GNTFAVSAFVKNRTAVYEAVSQRGTVNGAEMTLGFPSVVERDYALDRDP--MVAIAALRTGIVDESLRSMFNYYAAVMHYAVAHNPEVVVS-EHQGVAAEQGVRTELRIPVG |
2 | 7b0yA | 0.06 | 0.06 | 2.52 | 1.26 | MapAlign | | VCFFCSKLLVDSNNPKIKDIICEGGCGRYQPRIRRSGLELYAEWKLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFMCDGDIVIFNRQPTLHKMSMMGHRVRIQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIELRQTFENQVNRILNDARDKTGSSAQKSVVSGAKGSKINISQVIAVVGQQYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETELSKKLVIVNGDDPLSRQTDNKKKIIITEDGEFKALTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGV |
3 | 2rowA | 0.15 | 0.03 | 0.91 | 1.16 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESKK--EPEFPVEVGEKSNYICHKGHEFIPTLYHFPTNCEACMKPLWHKPALECRRCHIK------CHKDHMDKKEIIAPCKVYYD----------------------- |
4 | 3jb9U | 0.10 | 0.09 | 3.44 | 0.85 | CEthreader | | KEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVRPRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNLSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTTSFFPSPENSSFVLCLHKDELLCLDIQSEGSA---LACCWLTSSKIAVATADAISIFEFPVSSSGLQSVGEIDEKVNFLQAHPSGEYLLAASNEKCYIFSKSQVYNITVAQHITSLAVHPDGNLFVAGLENGELRFFETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNSDIFIWDLRKSELVQKIPLQTKVAAVSLDITQLLVSSDGETLYVHIYVKSRCMSQTHVSS----ISNLVWLNELHQLLFSTSNGAILRLG----------------- |
5 | 4uxvA | 0.05 | 0.05 | 2.25 | 0.68 | EigenThreader | | IYAEIDRLESWKIEILNRSIVEEMSKIKHLKMTGQTEEFFEKWREEWDEIVTAHMPKVEELLYDAEENADKYRFKKANQVLVHIDDLLTAAESSIEKILREISDLVTSEEKSRYSKSRKNLLAYSHLYGELYDSLEKDLDEIWY--ITARKVLLEQDRNLERLQSYIDDVPKLLADCKQTVPGQIAKLKDGYGEMKEKGYKLEHIQLDKELENLSNQLKRAEHVLMT--------ELDIDEASAILQLIDENIQSVYQQLEGEVEAGQSVLAYDKLKEEKEHTKAETELVKESYRLTAGDKLDAEHVAYSLLVEEVASIEKQIEEVKKEHAEYRENLQALRKEELQARETLSNLKKTISETARLLKTSNIPGIPSHIQEMLENAHHHIAEDIVNRASRESEELVEQVILIEKIIQFGNRFLKEAERRFYAFDYDDSYEIAAAAV |
6 | 5mqfT | 0.09 | 0.07 | 2.80 | 0.50 | FFAS-3D | | -----------------------KNSLAYRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQ--------------------SASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDINLVSFRRTIYLAIQSSLDFEEC--AHKLLKTKELCNMILDCCAQQRTYE--------------------------------KFFGLLAGRFCMLKKEYMESDTIHRLETNKLRNVAKMFAHLLYTDSLPWSV-----LECIKLSEETT----------TSSSRIFVKIFFQELCEYMGTLQPFFEGLLPRDNPAINFFTSIGLG |
7 | 7aavr | 0.12 | 0.11 | 4.00 | 1.38 | SPARKS-K | | SSQYSICFTLGSFAKIYADT--FGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRLAQVVGDVDTSLELGIHLTKEELKLNKKFFGEFTGFVDMCIPSPKVGAKTGGVDSDLGMSDCDPDGPLMCHTQFHAFGRVLS---GTIHAGQP-VKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPLDGLRKVNKSTTKVEESHVILGDCVMHDLRKMY-SEIDIKVADPV------VTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFTGPNILVDDTLPSEVDKA----LLGSVKDSIVQGFQWGTRGPLCDELRNVKFKILDAVVAQEPLHRGGGQIIPT |
8 | 5fm1C | 0.16 | 0.04 | 1.20 | 0.50 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGLGSNLLEALCDRYPKKIL-------------TTYSVFPARSSEVVVQS---------YNTILALRRLIEDSD----------------------------ATVVFDNASLLNISGKVFR--------------NPNIDLQHTNQLISTIISSVTNSIRFPS-------------------- |
9 | 5jcss | 0.05 | 0.04 | 1.69 | 0.67 | DEthreader | | ------------LEEPSKKMNTKFISHTVCGAGHRLMEISCIQMTEPV-LLVGETGTGKTVVLAWLLLDACMVI-RTRTLMSFLTLFVKNMMNLVRTSVIKSMI-YL-------I---TGHKRKGYWI-VLDELNLLELNRLLDDNRE-VHPHFLLFATQNPPGRKI------------NAHQNTEGDIGAQRPVR--FLLD---------EISLADDSVLE------EPERSLL---G---GKKGATSG--EMNLALAAQNP-FIDMLTSDDLLLIIAKIK-------------EFNLRDTWL-LYSIEDVDVFDFVDIIV-R--------------------------SGKTETIRFLASRVDVFSNSDIDSLMENR----------DNANLDPKHSRSFKKIKLNE----IP-HYVPSYLSR---PCIFAQVHDHEVKWAN |
10 | 1xfdA | 0.05 | 0.05 | 2.20 | 1.24 | MapAlign | | -----YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEESTKVAVSILTLCDATTGVCTKKH--------EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPADGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVR--------TMLKEQYIDRTRVAVFGKDYGGYLS--TYILPAKGENQGQTFTCGALEEQQFLIIHPTADEKIHFQHTAELITQLIRSSLKQHLYRSIINFF------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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