Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCSSSSSSSSCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCSSSSSCCCCSSSSSSSSSSSCCCCCCCCHHHHHHHHHHHHHCCCCSSSSSCCCCSSSCCCSSSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NEDINAVTSPPVSLSTPDPLFQLSLELAGPPGHSLGKEQQEGLAEAVLEALASKGGTGRCYFHGPSITTSLVFTVHMWKSPGCQGPSVATLHKALTLTLQKKPLEVYHGGANFTTQPSKLLVTSDHNPSMTHLRLSMGLCLMLLILVGVMGTTAYQKRATLPVRPSASYHSPELHSTRVPVRGIREV |
1 | 4ayoA | 0.06 | 0.06 | 2.59 | 0.49 | CEthreader | | WVKANLSFDVDGNAQVFETNIRLVGGLLSAHLASGDPVLLAKARDLADRLAKAFEASPHGLPWRYVNLRTGAVSDPETNLAEIGTYLYFDMAKRAMRHTLDRRSKIGLMAANIHAMTGAFTSRNASIDVYADSFYEYLWDAWALFGDEDCKRWAVECVDAQLAHQAKRYDGRLWFPMVDFETGAVTG |
2 | 2hv2A | 0.09 | 0.07 | 2.87 | 0.57 | EigenThreader | | -TTKRKKGKEEKEFDLVIYAFN----------QEPTAERQER-----FEKLLSHTQSYQVAT-PFQVNFHGVRYPAGIGYVAIKELADLAKQVIKDVYLENNNQAIYYSAEGYVIGTVEWNYLT-----NTAFKALAGFIGSHSGSVAALKADIQTWTQLFLGY---RSAETLSFYERL----QGDA |
3 | 4at7B1 | 0.16 | 0.12 | 4.07 | 0.43 | FFAS-3D | | -----------------------------------TQEELEAVQNMVLKAVSDWIDVG-LVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVTEDKYE--ILQSVDDAAIVIKNTKEPPLPVVREEMEKVKCLAALASLRHAKWFQARANVQIPPSTTYAITPM---KRPM------ |
4 | 2xs3A | 0.09 | 0.08 | 3.03 | 0.54 | SPARKS-K | | ------YVLQGSKWNKTTLKYYIY-----NSSSHLTTTERENAIRSAFALWSDKSTLS---FIQVYNPNQADIKIKWEKGNGDGYPFDGN---------TGILAHAFYPPPAGGNYAGHLHFDDDENWSINGSGIDL-ITVAAHEIGHLLGIEHSNVSSAL-MYPYYTGIKRQLDNDDCLAVWDLYG |
5 | 4urqU | 0.10 | 0.06 | 2.36 | 0.65 | CNFpred | | -----------------VFVLFVDLAGFKAINDTYGHLSGDEVLKTVSKRILDRVARSDVVARYG----GDEFTILLYDM---KEEYLKSLLERILSTFR---EPVRVENKHLSVTPNIGVARFP----------GENLEELLKVADMRMYKAKE-------------------------------- |
6 | 6g3dA | 0.10 | 0.08 | 2.94 | 0.83 | DEthreader | | AGKRMLRQLLIVIREVHKAGLMISENLAKNVVFSGLSRLASEIQLWSTQAEL-D-AS------------------FAGTSPQKKNPDSLERSRKAAFAAMG-P------------LVIELEP-------RSIDALIAATHAMTGVVRT-LHP--NKERMRQANKIGLDLQEVQTAGINVSADIALDP |
7 | 2fy3A | 0.07 | 0.06 | 2.43 | 0.68 | MapAlign | | QGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCPDAFIQVALQLAFYRLHRRLVPTYESASIRQEGRVDNIRSATPEALAFVAIRAQTAYTVMAIRFVLSTSQVPYGPVVPNGYGACYNPQPETILFCISSFSSSKFAKAVEESLIDMRDLC------------------------------ |
8 | 2iw1A1 | 0.10 | 0.09 | 3.14 | 0.36 | MUSTER | | ------------------IVAFCLYKYF-PFG------GLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHRNAEYYAWVQNHLKEHPADRVVGFNKMP--GLDVYFAADVCYAAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDK----DFQKHQTEPERFQIL |
9 | 2pffB | 0.18 | 0.16 | 5.06 | 0.84 | HHsearch | | RCEAYPNTSLPPSI------LEDSLENGPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLVV--------SGPPQSLYGLNLTLRKAKAPSGLD---QSRIPFSERKLKFSVASPFHSHLLVPASDLINKD-LV--KNNVSFNAKDI-QIPVYDTFDGSDLRVSGSISERIVDC |
10 | 5w1eA2 | 0.11 | 0.07 | 2.70 | 0.46 | CEthreader | | --------------------------------------SLPEIAQPHLTALAERVH-ESASLAVLADSGEEIQYTARASALPARATALGRVLLALPEVRARGYALVDEELRAIAVRVVAALNVALHAARRTADDCVAQILPELRHTADLVETELRVAGRFCRVAVV--------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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