Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
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| SS Seq | CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCSSSSSSSCCCCCCCCCCCCCCCSSSCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSSSCCCCCCCCHHHHCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSSCCCCCCSSSSSSSCSSCCCCCCSSSSSSSCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCSSSSSSSSCCCSSSSSSCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHCHCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSSSSCCCCCC MLLLLLLLLLLPPLVLRVAASRCLHDETQKSVSLLRPPFSQLPSKSRSSSLTLPSSRDPQPLRIQSCYLGDHISDGAWDPEGEGMRGGSRALAAVREATQRIQAVLAVQGPLLLVQNTDFLLYVRVAHTSKCHQETVSLCCPGWSTAAQSQLTAALTSWAQRRGFVMLPRLCLKLLGSSNLPTLASQSIRITGPSVIAYAACCQLDSEDRPLAGTIVYCAQHLTSPSLSHSDIVMATLHELLHALGFSGQLFKKWRDCPSGFSVRENCSTRQLVTRQDEWGQLLLTTPAVSLSLAKHLGVSGASLGVPLEEEEGLLSSHWEARLLQGSLMTATFDGAQRTRLDPITLAAFKDSGWYQVNHSAAEELLWGQGSGPEFGLVTTCGTGSSDFFCTGSGLGCHYLHLDKGSCSSDPMLEGCRMYKPLANGSE |
1 | 1lmlA | 0.19 | 0.14 | 4.59 | 1.17 | DEthreader | | ---------------------------------------------------VV-RDVNWGALRIAVSTEDLTHCARCTAEDILTNEKRDILVHLIPQAVQLHTERLKV-QQ-V---QGKWKVTDMV--GDIC-GDFKV-----P-------------------------QAHIT-EGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIA-S-RYDQLVTRVVTHEMAHALGFSGPFFEDA---------R--IVAN-VPNVRGKFDVPVINSSTAVAKAREQYGCD-TLEYLEVEDQGASAGSHIKMRNAQDELMAPAA---AAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQTQWPAMFCN-AIRCPTSRLSLGAGGVSAFMDYCPVVVPYGLNCI |
2 | 1lmlA | 0.23 | 0.17 | 5.40 | 2.69 | SPARKS-K | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDRDILVKLIPQAVQLHTERLKVQQ-------VQGKWKVTDMVGDICGDFKVPQAHITE--------------------------------GFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASR--YDQLVTRVVTHEMAHALGFSGPFFEDARI-------------VANVPNVRGFDVPVINSSTAVAKAREQYGCDT-LEYLEVEDQGGSAGSHIKMRNAQDELMAPAAAA---GYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTN-KCMEQSPAMFC--NAIRCPTSRLSLGACGVSAFMDYCPVVVPYSDGSC |
3 | 1lmlA | 0.24 | 0.17 | 5.33 | 2.03 | MapAlign | | ---------------------------------------------------------NWGALRIAVSTDLARVGQHVKDHAGAIVTCRDILVHLIPQAVQLHTERLKVQ-------QVQGKWKVTDMVGDICGDFKV--------------------------------PQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIA---SRYQLVTRVVTHEMAHALGFSGPFFEDA-------------RIVANVPRGKNFDVPVINSSTAVAKAREQYGCDT-LEYLEVEDQAGSAGSHIKMRNAQDELMAPAAA---AGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMVTQWPAMFCN--AIRCPTSRLSLGACGGSAFMDYCPVVVPYSDGSC |
4 | 1lmlA | 0.21 | 0.16 | 5.18 | 2.02 | CEthreader | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDDILTNEKRDILVKLIPQAVQLHTERLKVQQVQGKWKVTDMVGDICGDFKVP--------------------------------QAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASR--YDQLVTRVVTHEMAHALGFSGPFFEDARI-----------VANVPNVRGKNFDVPVINSSTAVAKAREQYGCD-TLEYLEVEDQGGSAGSHIKMRNAQDELMAPA---AAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWAMFCNAIRCPTSRLSLGACGVTAFMDYCPVVVPYSDGSC |
5 | 1lmlA | 0.22 | 0.17 | 5.44 | 1.44 | MUSTER | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGQDHAGAIVTCTAEDILTNEKRDILV---PQAVQLHTERLKVQQVQGKWK-----------------------VTDMVGDICGDFKVPQAHIT-EGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRY--DQLVTRVVTHEMAHALGFSGPFFEDARIVANVPNVRGKNF-----------DVPVINSSTAVAKAREQYGCDT-LEYLEVEDQGGSAGSHIKMRNAQDELMAPAAA---AGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSWPAMFCN--AIRCPTSRLSLGACGVSAFMDYCPVVVPYTQRAS |
6 | 1lmlA | 0.23 | 0.17 | 5.34 | 9.63 | HHsearch | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGDILTNEKDLVHLIPQAVQLHTERLKVQQ-------VQGKWKVTDMVGDICGDFKVPQA--------------------------------HITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRY--DQLVTRVVTHEMAHALGFSGPFFEDARIVAN-------------VPNVRGKNVPVINSSTAVAKAREQYGCD-TLEYLEVEDQGGSAGSHIKMRNAQDELMAPAAAA---GYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFL-TNKCMEQWPAMFCN--AIRCPTSRLSLGACGVSAFMDYCPVVVPYSDGSC |
7 | 1lmlA | 0.22 | 0.16 | 5.08 | 2.39 | FFAS-3D | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKLVKHLIPQAVQLHTERLKVQQVQGKWKVTDMVGDI-----------------------------------------CGDFKVPQA-HITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYD--QLVTRVVTHEMAHALGFSGPFFEDARIVANVPNVRGK-----------NFDVPVINSSTAVAKAREQYGCDTL-EYLEVEDQGGSAGSHIKMRNAQDELMAPAAAAG---YYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQQWPAMFC--NAIRCPTSRLSLGACGVSAFMDYCPVVVPYSD--- |
8 | 1lmlA | 0.15 | 0.11 | 3.75 | 1.22 | EigenThreader | | ---------------------------------------------------------VVNWGALAVSTYHCARVGQHAGATAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQ-------VQGWKVTDMVGD-----ICGDFKVP-----------QAHITEGFSN-------------TDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPA--ANIASRYDQLVTRVVTHEMAHALGFSGPFFEDA---------------RIVANVPNVRDVPVINSSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHI--KMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCWPAMFCNA------IRCPTSRLSLGACGGVSAFMDYCPVGSCTQRAS |
9 | 1lmlA | 0.23 | 0.16 | 5.05 | 3.32 | CNFpred | | ----------------------------------------------------VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVK-RDILVHLIPQAVQLHTERLKVQ-------QVQGKWKVTDMVGDICGDFKVPQAHI--------------------------------TEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRY--DQLVTRVVTHEMAHALGFSGPFFEDAR-------------IVANVPNVKNFDVPVINSSTAVAKAREQYGCDT-LEYLEVEDQGGSAGSHIKMRNAQDELMAPAAA---AGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLT-NKCME-WPAMFCN--AIRCPTSRLSLGACGVTR---------------- |
10 | 4yu5A1 | 0.07 | 0.04 | 1.68 | 0.67 | DEthreader | | -----PASSKEETKKAVEKYIEKQGDQANK--------------------------GSVRTDKVLVLLVEFSDYKHNNIDQ----YSNDFSREHYQKLFGTFKQYYESGSYTTDG-------------KGARDLVKEALHAAAEK----------------------------GLDLSQFDQDHLVIHAGVGQEAGGWSHRSKLIDP---AHDYTIEP-E--D---------GAVGVFAHAFGHDLGLP----------------------------------------------------------DEYDTK-YT----GSPVEAWSLSGGSWTGKAGEPTSFSPNKDFLQKNGGNWAVTGSDNLVYNTGLVVWYADPGEG-VDSHPEAFVGTYGNQADPAWSVNSTRG---IADAG---------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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