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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.05 | 1vdg0 | 0.421 | 2.58 | 0.344 | 0.460 | 1.20 | III | complex1.pdb.gz | 25,26,27,28,30,49,50,51,52,91,110,111,113,140,150,163,164,165,166,167,178,179,180,182,197,199 |
| 2 | 0.04 | 1p7q1 | 0.391 | 3.13 | 0.313 | 0.450 | 0.50 | III | complex2.pdb.gz | 86,87,119,120,121,147,148,204,207 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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