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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1yuz0 | 0.517 | 3.98 | 0.035 | 0.759 | 0.21 | III | complex1.pdb.gz | 20,22,26,29,34,69,73,74,76,77,80,81,83,84,85,86 |
| 2 | 0.01 | 1gjvA | 0.486 | 3.92 | 0.048 | 0.697 | 0.25 | SAP | complex2.pdb.gz | 88,99,102,103,104,105,106,107 |
| 3 | 0.01 | 2nz81 | 0.499 | 4.56 | 0.060 | 0.828 | 0.18 | III | complex3.pdb.gz | 6,7,10,14,53,56,78,79 |
| 4 | 0.01 | 1tyg4 | 0.307 | 5.50 | 0.053 | 0.607 | 0.21 | III | complex4.pdb.gz | 88,89,93,95,98,101,107,109,121 |
| 5 | 0.01 | 1xvbD | 0.521 | 4.83 | 0.057 | 0.876 | 0.38 | 3BR | complex5.pdb.gz | 102,105,106 |
| 6 | 0.01 | 1fz8D | 0.524 | 4.79 | 0.058 | 0.869 | 0.38 | 2BM | complex6.pdb.gz | 101,103,104 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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