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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.71 | 1a3rL | 0.797 | 0.83 | 0.646 | 0.828 | 1.47 | III | complex1.pdb.gz | 51,53,57,70,71,112,113,114 |
| 2 | 0.66 | 1ggiL | 0.800 | 0.82 | 0.625 | 0.828 | 1.30 | III | complex2.pdb.gz | 55,67,70,76,110 |
| 3 | 0.55 | 1e4xM | 0.783 | 0.91 | 0.600 | 0.819 | 1.37 | III | complex3.pdb.gz | 53,55,70,71,74,110 |
| 4 | 0.54 | 1jglL | 0.786 | 0.90 | 0.589 | 0.819 | 0.89 | EST | complex4.pdb.gz | 57,67,70 |
| 5 | 0.50 | 1wcbL | 0.769 | 0.99 | 0.532 | 0.810 | 1.24 | PE1 | complex5.pdb.gz | 53,55,71,112,113 |
| 6 | 0.45 | 1hi6A | 0.793 | 0.78 | 0.526 | 0.819 | 1.18 | III | complex6.pdb.gz | 55,70,71 |
| 7 | 0.36 | 1cu4L | 0.799 | 0.85 | 0.521 | 0.828 | 1.14 | III | complex7.pdb.gz | 51,53,67,109 |
| 8 | 0.15 | 2z92B | 0.777 | 0.89 | 0.585 | 0.810 | 0.89 | ENE | complex8.pdb.gz | 57,67,110 |
| 9 | 0.10 | 1j050 | 0.802 | 0.75 | 0.604 | 0.828 | 1.51 | III | complex9.pdb.gz | 55,57,59,63,64,65,67,70,71,108,110,112,115 |
| 10 | 0.10 | 1kb53 | 0.792 | 0.75 | 0.621 | 0.819 | 0.86 | III | complex10.pdb.gz | 47,51,52,53,71,113 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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