Detailed GPCR-I-TASSER Statistics for Q9NQ84

Submitted Sequence

>sp|Q9NQ84|GPC5C_HUMAN
MAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAG
IVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRR
FLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLV
RGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCGRYKRWRK
HGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVLFYVIPEV
SQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVAAKRPVSPYSG
YNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQ
AATPPKDGKNSQVFRNPYVWD

Predicted Secondary Structure

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   | 
Sequence MAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD
Prediction CCCCCCCCHHHCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCCSSSCCCHHHHHHHHHHHHHHHHHHHSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHSSSSSCCCCCCCCCCCCCCCCCCSSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSSSCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Conf.Score 985555430214721214665147989999888777664010263342899999999999999999998751555897178623155067999999999999899852588734346789999999999999999998865541104558642332255689999898751222364246677986434568887089994689838999999999999999999999997056840241189999999999999999998883265434564201146899999999998723740305889824700054013567888766775543356766663655577775434578888777676545666898621542047876777332468778899987778764345333456667789976788760005886679

Predicted Solvent Accessibility

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   | 
Sequence MAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD
Prediction 732340000000000000303126321137326302320230021410000000010121012023122100110121332333312000000000012011000000011230000001111030100000000000000000012233322100000000103000100000000001223312333343533110000032320000001011100011011000101024146221000000000100200110000000102343443211000000000110111000000010000011326522563233444323523146443333324241234543435444432434333422421221112202433447443313133343444444435333326432314434434144653434324222308

Predicted Normalized B-Factor


Read more about predicted normalized B-factor

  Top 10 Templates Used by GPCR-I-TASSER


Rank PDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   | 
Sec.Str
Seq		CCCCCCCCHHHCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCCSSSCCCHHHHHHHHHHHHHHHHHHHSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHSSSSSCCCCCCCCCCCCCCCCCCSSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSSSCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD
14or2A 0.18 0.16 0.66 1.53Download KDFRHGFDILVGQIDDALKGKVKEAQAAAEQLKQKYLIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYTPVVKSSSRE----LCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKE------VYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTR--NVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSN-------YKIITTCFAVSLSVTVALGCMFTPK-MYIIIAKPE------------------------------------------------------------------------------------------------------------------------------------
26eznF 0.07 0.23 0.99 1.77Download FAVIKFESIIHEFKFLNWFDDRTWYPLGRVTGGTLYPGLMTTSGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASSRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIVFGLIQIVAFGDFVKGQISTAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLFHVFVIAYSVLCSYFAGVMVRL-----MLTLTPVICVSAAVALSKIFDIYLDFKIKPAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTKLALIDIFGGLIGFGGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYDAQGRTLRDVGELTRSSTKTRRSIKRPELGLRV
34or2A 0.17 0.17 0.66 2.98Download ---RHGFDILVGQIDDALKLANEGKVTTRNAYIQKYLIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFV----LYRDTPVVKSSSRELCYIIGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGCTRKPRFMQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKE------VYLICNTSNLGVVAPLGYNGLLIMSCTYYAF--KTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYK-------IITTCFAVSLSVTVALGCMFTPKM-YIIIAKPERNV---------------------------------------------------------------------------------------------------------------------------------
44xeeA 0.09 0.21 0.89 1.03Download -------------------------------------GPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKSTLG---SLALSDLLILLLAMPVELYFIWVHHPAGCRGYYFLRDACTYATALNVASLSVERYLAIHPFKAKTLMSRSRTKKFISAIWLASALL---AIPMLFTMGLQNRSADGTHPGGLVCTPIVDIQVNTFMSFLFPMLVISILNTVIANKLMVPGRVQALRHGVLVLRAVVIAFVVCLPYHVRISDEQWTTFLFDFYHYFYMLTNALFYASSAINP-ILYNLVFLSTLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVIT---KDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKR--WD
54or2A 0.19 0.14 0.56 3.71Download ---------------------------------------VRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYTPVVKSSSR----ELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILA-RKPRSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEV-----YLICNTS-NLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYK-------IITTCFAVSLSVTVALGCMFTPKMYIIIA-KPE------------------------------------------------------------------------------------------------------------------------------------
64or2 0.18 0.16 0.63 6.03Download EGKVK---EAQAAAEQLKT---TRN-AYIQKY-LIPVR---YLEWSNIESIIAIAFSCLGILVTLFVTLIFVLDTPVVKSSSR----ELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILARKRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPS------IKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNY-------KIITTCFAVSLSVTVALGCMFTPKMYIIIAK-PE------------------------------------------------------------------------------------------------------------------------------------
74oo9 0.18 0.19 0.56 4.59Download -------------------------------------SPVQYLRWGDPAPIAAVVFACLGLLATLFVTVVFII----YRDTPVVKSSSRELCYLAGICLGYLCTF-LIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTYRAARILAMSKKNSRWAQLVIAFILICIQLGIIVALFIMEPPDIM-------------VY-LICNTTNLGVVAPLGYNGLLILACTFYAFK--TRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKI-------ITMCFSVSLSATVALGCMFVPK-VYIILAKPERN----------------------------------------------------------------------------------------------------------------------------------
84or2A 0.18 0.16 0.66 2.46Download KDFRHGFDILVGQIDDALKLANEGLKTTRNAYIQKYLIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYTPVVKSSS----RELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKE------VYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTR--NVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSN-------YKIITTCFAVSLSVTVALGCMFTPK-MYIIIAKPE------------------------------------------------------------------------------------------------------------------------------------
94or2 0.19 0.16 0.58 6.77Download ----------------------------------KYLIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVRDTPVVKSSSRE----LCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILARPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMP------ILSYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFK--TRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNY-------KIITTCFAVSLSVTVALGCMFTPKMYIIIAKP--------------------------------------------------------------------------------------------------------------------------------------
104or2A 0.20 0.15 0.56 2.58Download -------------------------------------IPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLY----RDTVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILARKRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMYPSIKE---------VYLICN-TSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNY-------KIITTCFAVSLSVTVALGCMFTPKMYIIIA-KPE------------------------------------------------------------------------------------------------------------------------------------
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by GPCR-I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: MUSTER   2: PROSPECT2   3: FFAS-3D   4: SP3   5: SPARKS-X   6: HHSEARCH2   7: HHSEARCH I   8: Neff-PPAS   9: HHSEARCH   10: pGenTHREADER   

  Top 5 Models Predicted by GPCR-I-TASSER

Generated 3D models Estimated local accuracy of models
  • Download Model 1
  • C-score=-2.19 (Read more about C-score)
  • Estimated TM-score = 0.46±0.15
  • Estimated RMSD = 12.3±4.4Å

  • Download Model 2
  • C-score = -2.51

  • Download Model 3
  • C-score = -3.38

  • Download Model 4
  • C-score = -3.87

  • Download Model 5
  • C-score = -3.82


    • [Click on Q9NQ84_results.tar.bz2 to download the tarball file including all modeling results listed on this page]