●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●ATGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●TM-search ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●rMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●HPmod ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

Subject: Error in code - SES
Date: Fri, 1 Feb 2019 09:59:50 +0000
From: LANGENFELD Florent <florent.langenfeld@lecnam.net>
To: yangzhanglab@umich.edu <yangzhanglab@umich.edu>


Dear EDTsurf maintainers,

I recently used your EDTSurf software to compute SES of proteins. Accordingly with the 
inline documentation, I provided the '-s 4' flag to the soft, which produced a warning  
'omit wrong value after -s' and set the value to the default value of 3 (MS). I observed 
the same behavior for bath the Linux executable and the executable compiled from the 
source code.

I've then made a couple of modifications to the EDTSurf.cpp  and generated an executable 
allowing for the computation of the SES, which seems to work so far. The corrected file 
is attached to this email; please feel free to use the modifications as you wish.

Best regards,

Florent Langenfeld
GBCM - CNAM
2, rue Conté - 75003 Paris

EDTSurf_updated.cpp