Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | MSSTLLATANQFYLLQQKKGRSFPHHGFTPRAIATKRFAENTTTLSLSVGFFLPTMTQVHQQLEQLTVERDDIPMEKVVTTVVEAIKDNLVLFGDKLARLAVQTAIACGLAKKNKPYMNSVVYLWNVYPGLHDHYVGETLRYLRLPRFLSSLFGPHALKSDVDVFMQDISAVAAAEDSMKRAVLDMVADSVVDMVRVLLPPWLLRGPALSFKRRLKLFGHDILMRFTVAVTKVTGAGVGRAIAGHRGEYWGEIIGVATASFLFERISAMFLDYK |
1 | 5cwcA | 0.06 | 0.04 | 0.65 | 0.72 | DisCoVER | | EKEELRERLVKICVENAKRKGDDTEE-AR--EAAREA----FELVREAAERAG--ID----------------------------------SSEVLELAIRLIKECVENAQR---EGYDISACRAAAEAFKR---------VAEAAKRA-GITSSEV---LELAIRLIKECVENSEACRAAEAFKRVAEAAK--------------------------R--AG--ITLKRAIEEIRKRVAQREGNDISEACRQAAEEFRKKAEELKR------- |
2 | 4av3A | 0.06 | 0.05 | 0.74 | 0.83 | DEthreader | | --------LVLGA-TFAIGVAFLL-GAVMSASAGIVGMKMATRANV-----VGGGVYTK---------------------AADMAADTADNVGDNVGDVAGLGADLLESFVGAVS--IIALLVATSVSVDSYGPIA--------------------------------DHLDAVGNTTAAIGKGFAIGSAIFAALSLFAMFSSVLLLNMVAEFGGVLIGTVLSGAMLAILTANSGGAWDNAKKEKHLVDTGDPLKDTVGPSLDILIKIMSVVSV |
3 | 3tx3A | 0.11 | 0.09 | 0.82 | 0.46 | CEthreader | | -------------------AYSNSGLAYIGRGLELIRTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWEFILWPLAVITIIALFSFIFSTIMHLIAAPFNGLLAEKVERYEESLGDEGFLGLFKDIPRTLKREMQKLMYYIPRALGFFLLSLVIP---------------------VIGQVLWYIFVCWMMSIQYLDYPFDNHK--LSFPRMRSELHQQRSKTLGFGFGVTVLTMIPLINL------IIMPLAVCGATSLWVDHYRRSALS- |
4 | 7ctpA | 0.07 | 0.07 | 0.99 | 0.67 | EigenThreader | | TQFPLILWHRHYYFCMMTEAEQDKWQAVLQDCIRHCNNSKMLCGNEVQILSNLVMEELGPELKAELGPRLKGKPQERQRQWIQISDAVYHMVYEQAKARFEEVLSKVQQVQPAMQAVIRT---DMDQIITSKEHLASKIRAFILPKAEVCVRNHVQPYIPSILEALMVPTSQGFTEVRDVFFKEVTEKLSSCYEKMESLRLDGLQQRFDVSSTSVFKQRAQIHMREQMDNAVYTFETLLHQELGKGPTKEVLERVLKKYDYDSSSVRKRFFREA |
5 | 2pffB | 0.14 | 0.12 | 0.89 | 0.64 | HHpred | | FIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-----SKVGQFDQVLNLCLTENCYLEGNDIHALAAKLLQETLVKTKELIKNYITARIMASALFRAVGEGNAQLVAIFDLYQTYH-VLVGDLIKFS--AETLSELIRTTLDAEKVNILENPNTPDKDYLLSI-PISCPLIAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE--------------------SFF-VSVRKAITVLFFIGVRCYE |
6 | 6fgzA | 0.13 | 0.11 | 0.81 | 0.53 | MRFsearch | | ------------YIGVICRGPADLRKSIQQAREDEIRFFRSTNTLARTLSTLLDTLPSIRQKMSQQLAEWRLQTLGDLGGALLNVINRYSSEFAKSLINYIFNDIYAKELQS-----------------GLTREDIRTAIRNV-PELAFELLVKK-----QITHFVP---PAYSCVDLVYDELVRLALNCETELLQR--------------YENLRSEILACAQNLLRELKQPCLEMVQNLIAMEHKDDIELIQTLLYFDVVRVNMMDMVPKA- |
7 | 3ok8A | 0.12 | 0.09 | 0.73 | 0.69 | FFAS-3D | | --------------------------------------PEMDQFYRSTMAIYKSIMEQFNPALENLVYLGN--NYLRAFHALSEAAE----VYFSAIQKIGEQALLGEILVQ---------------MSDTQRHLNSDLEVVVQ--TFHGDLLQH--MEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRM-------ERKRDKNAREMKESVNRLHAQMQAFVSE----SKRAAELEEKRRYREKHLLLSNTFLQFLGRARGMLQNR |
8 | 6w2rA | 0.12 | 0.09 | 0.76 | 0.60 | SPARKS-K | | ----------------------------------------------GTTEDERRELEKVARKAIEAAREGN---TDEVREQLQRALEIARESGTKTAVKLALDVALRVAQEAAKRGNKDAIDEAAEVVVRIAEEALEQALRVLEEIKAVLKSEKTEDAKKAVKLVQEAYKAAQRAIEAAKRTVIKLAIKLAKLAARAALEVIKRP--KSEEVNEALKKIVKAIQEAVESLREAEESGDP-----EKREKARERVREAVERAEEV---------- |
9 | 5w81A | 0.10 | 0.08 | 0.80 | 0.77 | CNFpred | | ---------------------------FTARFLLLQPAMFGLHHLGMQIRIALFSIIKKTLKLSSRVLD--KISTGQLVSLMSANLGKFDQSLGMA--HFIWISPLQCILCT---------GLIWELI----DVNSFCALAAISLLGVLQAFLS-----HKMGPYKAQKVLLTNKRLALTSEIMENLHSVKAYGWEEIMETLIKN----IRQDEVKLTRKIGSLFYSSAYFFSAIFVIVAAVVPH-RRIFTTLSYCMVLRMTVTRQLPGSIQMW |
10 | 4f4cA4 | 0.08 | 0.05 | 0.72 | 0.83 | DEthreader | | ---------WQLTL----------V-MLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETSSITVLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALA------------------------------SQ-HFW----------V---AAQGICSFLMTFFMGIASESLTRDLRNKLFRNVSQHIGFFDNSGKISTRLATDVPNLRTAIDRFSTVITTLVSMAGAISTSTLGFATSYFPE--K---A------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|