>PF19218 (450 residues) YFCKEHVEGYGNSTFVKDEYCASTMCKVCLFGYQELADLPHTKVVWKYVGFPIFVNWLPF LYLAFLFIFGGIFVKGLVCYFLAQYVNNFGVYFGMQETFWPLQVIPFNVFGDEIVVTFLV YKALMFIKHVCFGCDKPSCVACSKSARLTRVPMQTIVNGANKSFYVVANGGSSYCHKHKF FCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGDSFIEVDKVSFENGFYYLYSGETFW RYNFDVTDAKYGCKEVLKNCNVLADFIVYNNTGSNVSQIRNACVYFSQMLCKPIKLVDAT LLSTLNVDFNGALHSAFIQVLNDSFSKDLSSCASMTECKQALGFDVSDEEFVNAVSNAHR FNVLLSDNSFNNLLTSYAKPEEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQ QLSEEGRKYLVKTTKAKGVTFLLTFNSNAM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | YFCKEHVEGYGNSTFVKDEYCASTMCKVCLFGYQELADLPHTKVVWKYVGFPIFVNWLPFLYLAFLFIFGGIFVKGLVCYFLAQYVNNFGVYFGMQETFWPLQVIPFNVFGDEIVVTFLVYKALMFIKHVCFGCDKPSCVACSKSARLTRVPMQTIVNGANKSFYVVANGGSSYCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGDSFIEVDKVSFENGFYYLYSGETFWRYNFDVTDAKYGCKEVLKNCNVLADFIVYNNTGSNVSQIRNACVYFSQMLCKPIKLVDATLLSTLNVDFNGALHSAFIQVLNDSFSKDLSSCASMTECKQALGFDVSDEEFVNAVSNAHRFNVLLSDNSFNNLLTSYAKPEEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNSNAM | |||||||||||||||||||
1 | 4m1rA | 0.08 | 0.04 | 0.54 | 0.61 | DisCoVER | ----------------------------------------M-VAPI--------------------------------TT--SG-----------------NKVLFGQQGSIA-GNSFFWSNTGGEKYYNQTVAWLKSSLVRAA------M-GVDESGGYITDSYNKRVTVVDAAIANNMYVIIDWHYGNNNNVIYE-IYNEPLQ-WSSVIKANLIVVGTPTWS------QDVDVA-----A-N-----DP-ITGYA--N-IA-YTLHFYAGTHGQSLRNKASTALSKIPLFVTEWGSVNAGG-GSV---------ATAETNSWV-------FMKTNNI--S-N-A----N--WA--L------N----DKAEGA-------------------S-ALVSGASANGGWTSQLTASGTLAKSIISGW------------------------ | |||||||||||||
2 | 6rc9A | 0.04 | 0.03 | 0.66 | 0.67 | DEthreader | NT---LAWALRRYDLDFSKLWNEV-NKVPV--EVAQ----------------SV-YYEQLQ---------------------R--GLGLPQFGADDFPTPWPRRHP-------------------ANIGNLTWFGQALLV-FGGNGHVTKSAHT--------APLSIGV---FRVRY-------TVTG--WPYALFSGMVNKQTDGLKDLPFNNNRWFEYV---------DTATVPRLLYLLVAQGQ------------LLRE-DLQ-----MWAWQVYWSNKLVNENAYQPNSLTFNLVGSVLDQVLDYVPWIGNGY-------------GSIPVLVNRS-YGEVNGLLNL-TW-PQLGGWLVTFTDFVPLGLQLTGLDASDQLPWAFRGSWVNGRVFGTSSGNLSVVWL---------------APNTNTGND--VVGVGR-----PG | |||||||||||||
3 | 3bofA | 0.08 | 0.08 | 1.00 | 0.43 | CEthreader | FMKYGYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHGLEDKLDPIVRNAVRIARRAAGEKLVFGDIGPTGELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFILELKAAVLAAREVSRDVFLIAHMTFSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVGNRKPLQRKKKRIFAVSSPSKLVTFDHFVVIGERINPAGRKKLWAEMQKGNEEIIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDRVIFDPGVLPLGAEGKPVEVLKTIEFISSKGFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIMNPLDETLMKTLNATLVIL | |||||||||||||
4 | 2olsA | 0.07 | 0.07 | 0.93 | 0.73 | EigenThreader | ------NYVIWNLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAFLAHNGLSERISAALAKAELARVGKEIRQWILDLDAEIEAAWNKMVADARSSATAFANVKEAMHHVFASLYNDRAISYRVHKGFDIVAVR-----SDSGASGV-MFTLDTESFVTSSYGLGENVVQGAVNPTDKAEAGKSNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQA---RPEIVTNRGGRTCHAAIIAREPKAPVKVMMNVNPELAFSFAN--------LPSEGIGLAEFIINRQIGGYASKIAEGVATLAASVYPRLG--FRGAARYVA---DNFKDCFALECKALKRVRDEM--GLTNVEIMIPFVRTLGEAEAVVKALKENGLERGMMCEQFLQYFDGFSIGSNDMTQLTLGMLHLAISACRKQNKYVGIC-GQGPS | |||||||||||||
5 | 3gnhA2 | 0.16 | 0.04 | 0.23 | 0.32 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPDEARKAVRTLKK-YGAQV--I-ICATGGNEPGQQLTYEEMKAVVDEAHMAGIKVAAHAH--------------GASGIREAVRAGVDTIEHASL----------------VDDEG----IKLAVQKGAYFSMDIYNTD- | |||||||||||||
6 | 1z2iA | 0.12 | 0.06 | 0.52 | 0.48 | MRFsearch | ---------------------------------------------------LARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGV------------------------DSHGVRLLAHYVTALEGGRLN------------RRPQISRVSG-FGAVETIDADHAHGAR----------------ATYAAMENAMALAEK------------FGIGAVAIRNGYIGLAFCTNPIAVGVPAAD---------------DMPWLLDMATFKGAALAGVVEIFSAVLGAFVLALKPEAFLE--RDVFDESMKRYLEVLRGSPARPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSP------------------------------------------------------------------------------------- | |||||||||||||
7 | 5ejqA | 0.10 | 0.08 | 0.85 | 0.62 | FFAS-3D | ------------SLYSFYDYANKNFNIEKLKQKDDIFSYQESEIESSLHSDAEQTEVAVEIFSKVLHYMNSKKDPADFYSPVKFILTKGLAIESLRDEIYLIKQSTSDLNIRVWELIHFTCYFAAYLKTTIQQSDVSKAQASYRKQVPSVTELESIKENRPIFVRITATDGSLK------------GLHIDSATTCQESSNDLSQRSRMRVNSKENGFTI---IESFNGIERDIAPTDK---LCDVLSKVENLQATLSSKIQVNFKFVFKTNVPTTSINVENEFYYHQLF--------NDLFNSKDQDYQISIGSLKLQFESSDYTDEIRAWDDFINKYKSHKGLSPEDAKKQMVQLLEKHGINIYDPATSKMLESV--KYSNQS---------------SVSIILENKSTLQADVQKLVSLIKEYSLYLRNNALEH------------- | |||||||||||||
8 | 2r7oA | 0.10 | 0.09 | 0.95 | 0.58 | SPARKS-K | LSMSSASNGESRQKFTIFSTKKNMHVMDDMAERYTPGIIPPVNLGRRDVRRTRIIFILPYEYFIAQHAVVEKMLIYAKAEFQLLSYGDVTRFLSNNTMVLYTDVSQWDSFRKGIIMGLDILATLNLYKQTQINLMDSYVQI-PDGNVIKKIQYGAVASGEKKAANSIANNKHSFATKIIRVD------GDDNYAVTKQMIQDVSNDVRARMNAKVKALVSTVGIEIAKRYIAIFFRAGINLLN-NEKRGQST--QWDQAAILYSNYIVLRGFETDREFILTKIMQMTVLTTNSTFKVFQRAFMSLSSQAASSTFKNYVTRLSEQLLFSKAKLNSYAPISLEKRPVTFKSTINDILRDIKPFHLPIQYQKFM----------PTLPDNVQYIIQCIGSRTYQIEDDGSKSA----ISRLISKYSEELYKVIQLYLISLGIPKIDADTYVGS | |||||||||||||
9 | 2fgeA | 0.12 | 0.08 | 0.69 | 0.87 | CNFpred | ----------------------------------------KIIVRGKSMAG-RADDLFNLMNCLLQEVQDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDISSSLEEIRRSLLANGCIVNMTADG-LRNEAIVIPTQVNYVG----KAGNIYSTGYELDGSAYVISKHISNWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSY--------------------------------RDP---NLLKTLDIYDGTGDFLR--------------GLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRKREEIL-----------------------TTSLKDFKDFAQ------AIDVVRDKGVAVAVASA----------EDIDAANNERSNFFEVKK----- | |||||||||||||
10 | 6h02A | 0.06 | 0.04 | 0.71 | 0.67 | DEthreader | --------------------------YSRDMVCNMLGLN--CPVEASFPHMVLFISGSIQK-----------------TCIWIHLNRKAQNKLQIPIPLRHHEFLQQSLKIALLCNALDSTVRLLVYME----IMHHIQPHYR--------------------------ALRLITAL-GSSEVQPQFTPLLTLATHTLCFPGPLQAFFKQ------------------Q----------ELLPVSKSLETLLLNTLHYYEMH---LRDRAFLKRKLVHAI-----------------YCAMNPWVP-D-DTYYCRLIGRLVTFPAAHALTVVLVITAWMNAIGLDFTAMSCSYTLALA----HAVWHHSSIGQLSLIPKFLTEVLLPIVQLYVYHLVGFLFRTRCMIEIGVAYDMLNVDLYMPIDFLYHMKYMFTGDSVKVEIINLKPAL | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |