>PF19213 (255 residues) LFIYTNTIWVNPVILTPVFCILLFLSLVLTMLLKHKFLFLQAFLLPTVIATALYNCAWDY YMARFLADHFDYNVSVLQMDIQGLVNVLVCLLVAFLHTWRFAKERFTHWCTYVCSLIAIV YTYYYSGDFLSLLVMFLCAISNEWYIGAIGFRLARLLVLCVSEDIVDVFGEVKFTLVIYL ICGYLICVYWGILYWLNRFFKCTMGVYDFKVSAAEFKYMVANGLRAPQGPFDALWLSFKL LGIGGDRCIKISTVQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LFIYTNTIWVNPVILTPVFCILLFLSLVLTMLLKHKFLFLQAFLLPTVIATALYNCAWDYYMARFLADHFDYNVSVLQMDIQGLVNVLVCLLVAFLHTWRFAKERFTHWCTYVCSLIAIVYTYYYSGDFLSLLVMFLCAISNEWYIGAIGFRLARLLVLCVSEDIVDVFGEVKFTLVIYLICGYLICVYWGILYWLNRFFKCTMGVYDFKVSAAEFKYMVANGLRAPQGPFDALWLSFKLLGIGGDRCIKISTVQ | |||||||||||||||||||
1 | 5tj5A | 0.06 | 0.05 | 0.74 | 1.03 | MRFsearch | ------------KMKLSILMGFIHMTYSYFFSLANHLDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFDIMIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFG--------FRGFVGVFMTVALFAMWFALTCAVLVLMEG--------------------------------TSAMLHSLRL--------------- | |||||||||||||
2 | 4he8F | 0.14 | 0.13 | 0.93 | 1.18 | CNFpred | ---GYSRFFAYFNLFIAMMLTLVLADSYPVMFIGWEGVGLASFLLIGARKAFIVNRIGDLGFMLGMAILWALYLSISELK-DLLALAGLLLFLGAVGKSAVWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPVSYAIAVVGLLTAAYGALSAQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALL---FLASGSVIHAL-GGLWLPQTRWHALIGALALGGLP----------- | |||||||||||||
3 | 2onkC | 0.12 | 0.07 | 0.60 | 0.97 | DisCoVER | -------------------VLLPVAATVQLEFLKAA--VWKVVLTTYYAALISTLIAVIFGTPLA----------------------------------------YILAR-IVDLPVVIPHTVA----GIALLVVFGKFVDALPGIVVAMLFVSVPIYINQAKEGFAHIVAGAMSWARGISEFGAV-VV--IA------YYPMIAPTLIYRYLSEGLSA-------------AM--PVAAI---------L-IL- | |||||||||||||
4 | 1cjyA | 0.08 | 0.06 | 0.76 | 0.67 | DEthreader | -P--CPDLRFSMALCEKTFRVVAILGSAMVGFSGV--LSGSTWYMSTLYSHP-F---------RYVESLWKKKSGQPVTFTIFGMLIGETIHNRMNTT--SLKE----N------PL--TC--LHVKPVSELMFADW----------VEFIGMPDLFGSKF------K-YEE-NPLHFLMGVWGSAFDSGLTFSKELLLAEPTIIHFVLANFDIFDDPESPSNQYPNQAFKRLHDLMHFNTLNN----------- | |||||||||||||
5 | 6n3tA | 0.06 | 0.05 | 0.99 | 0.69 | CEthreader | AGLNPLASELTGTIGEDQKRAEVAAIPLVAVVLF--FVFGTVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVTTREEVERGFWGRLVNVVMKFRTEPLTLVMKALTVSGFTDPDNDPEKMWKERPANDSGSKDPSVRVIQNGLENR | |||||||||||||
6 | 2wjvA | 0.08 | 0.07 | 0.91 | 0.63 | EigenThreader | RQITAQQINKLEELWYQYQNIFGPLVKLEADYDKKLKEFDRMQSALKTFAVDYIYHKLLGSQVYAVKTVLQRPPPGTGKTVTSATIVYHLARAVDQLTEKIHQLALHNQIRN------------MDSMPELQKLQQLKDETLSSADEKRYR-------ALKRTAERELLMNPECMVPVVKAAKARLVVLGALSAFPSNIFYKPMFFYVTTPYEGQRSYLVQYMQFSGLHTKLYQEV---EIASVDASCVIIVGNP | |||||||||||||
7 | 6irvA1 | 0.21 | 0.03 | 0.15 | 0.31 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RELC-QQREGIEPPRESFNRWMLERKVVDKGSDPLLPSN--- | |||||||||||||
8 | 3jacA | 0.11 | 0.08 | 0.73 | 0.97 | MRFsearch | ----------ATDVYALMFLADIVDIIIIIFGFQVPQAFLFMLLVQFGTMVIDRALYLRKTVLGKLAFQV----------VLVVAIHIWMFFILPAVTERMFSQNAVAQLWYFVKCIYFALSAYQIYNHLNLFLFQ------GFRLVPFLVELRAVMDWVWTLSLSNWMCVEDIYANIFIIKCKIVKYGMGGLIILF--------------------------------LIAIIWFPLLFMSL------------ | |||||||||||||
9 | 5iwkA | 0.12 | 0.11 | 0.91 | 0.69 | FFAS-3D | ---------LDQTPVKELVSLKWYGRPYFCVLGAIYVLYIICFTMCCVLRLVGELVSIVGAVIILLVEIPDIFRQTILGGPFHVIIVTYAFMVLVTMVMRLTNSDGEVVPMSFALVLGWCVMYFARGMIQKMIFGDLMRFCWQMAVVILGFASAFYIIFQTEDMALFSTFELSITYAAFAIIATLL--------MLNLLIAMMGDTHWRVAHERDELWRAQV-------VATTVMLERKLPGLGDRWFLRVEDRQ | |||||||||||||
10 | 5u71A1 | 0.09 | 0.09 | 0.98 | 0.78 | SPARKS-K | YITVHKSLIFVLIWCLVIFLAEVAASLVVLWFYIYVGVADTLLLVHTLITVSKILHHKMLHSVNRFSKDIAILDDLLPLTIFDFIQLLLIVIGAIAVVAVLQPIVAFIMLRAYFLQTSQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTT---GEGEGRVGIILTLAMNIMSTLAVNSSIDVDSLMRSVSRVFKFIDMPTE--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |