Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTTAVLTVVDGKLKLIADIPSVFESVFDVFKSALEGIFDACANTVTIAGKAVRAAFDYLLFDNAIVKLQSVKVSGLKQAGVKNALYASVVIGPTQNVKTTRVEVVNVKLTPITDKVPFNREGYVALVDGVAFFVNDGYYRLMADSDCVLEEPVFKAASG |
1 | 3ld1A2 | 0.15 | 0.13 | 0.89 | 2.88 | HHpred | | ----TVVVMERTL-VV---REFAGTCLASINGAVAKFFEE-LPNGFMGAKIFTT---FAFFREAAVKIVDNIPNAPRGTK--GFEVVGNAKGTQV--VV-RGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGNFHDVHCCER- |
2 | 3ld1A2 | 0.11 | 0.09 | 0.86 | 1.03 | DisCoVER | | ---TVV-VMERTLVVREFAGTCLASINGAVAKFF----EELP--NGFMGAKIFTTFAFFRE----AAVKIVDN--IPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLT-----LLDQKVESEGWSAILGHLCYVFKSRFYAAPLSGNFALHDVHCCERV- |
3 | 3ld1A | 0.16 | 0.13 | 0.79 | 1.22 | MRFsearch | | --ITVVVMELVVREFAGTCLASINGAVAKFFEEL--------PNGFMGAKIFT---TFAFFREAAVKIVDNIPNAPRG--TKGFEVVGNAKGTQVVVR---GMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAA--------------- |
4 | 3ld1A2 | 0.17 | 0.14 | 0.86 | 1.05 | SPARKS-K | | ----TVVVMER-----TLVVREFASINGAVAKFFEE-----LPNGFMGAKIFT---TFAFFREAAVKIVD--NIPNAPRGTKGFEVVGNAKGTQVVVRGMR---NDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSFYAAPLSGNFALHDVHCCERVV |
5 | 3ld1A2 | 0.17 | 0.15 | 0.89 | 1.05 | MUSTER | | ----TVVVMERTLVVREFAGTCLASINGAVAKFFEEL-----PNGFMGAKIFT---TFAFFREAAVKIVDNIPNAP--RGTKGFEVVGNAKGTQV---VVRGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAASGNFALHDVHCCERV |
6 | 3ld1A2 | 0.15 | 0.13 | 0.89 | 3.06 | HHsearch | | ----TVVVMERTLVVREFAGTCLASINGA----VAKFFEE-LPNGFMGAKIFTTF---AFFREAAVKIVDNIPNAPRGTK--GFEVVGNAKGTQV--VV-RGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGNLHDVHCCERV |
7 | 3ld1A | 0.14 | 0.11 | 0.82 | 1.18 | HHpred | | ------------REFAGTCLASINGAV-------AKFFEE-LPNGFMGAKIFTT---FAFFREAAVKIVDNIPNAPRGTK--GFEVVGNAKGTQV---VVRGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGALHDVHCCER- |
8 | 3ld1A2 | 0.17 | 0.13 | 0.78 | 1.13 | MRFsearch | | ------VVMERTLVVREFAGTCLASINGAVAKFFEEL-----PNGFMGAKIFTT---FAFFREAAVKIVDNIPNAPRG--TKGFEVVGNAKGTQVVVR---GMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYA---------------- |
9 | 3ld1A | 0.14 | 0.13 | 0.90 | 3.06 | HHsearch | | IFQAALAIFLVVREFAGTCLASINGAVAKFF-------EE-LPNGFMGAKIFTT---FAFFREAAVKIVDNIPNAPRGTK--GFEVVGNAKGTQV---VVRGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGALHDVHCCERV |
10 | 1cb5A | 0.09 | 0.07 | 0.75 | 0.83 | DEthreader | | --PQEG--CWICLNRLPMK--NIEE-FE--F-S-QSYLFFWDKVERCYFFPANGGQWDML----VNVYGVITFGPI------TPLEYKNMEILYNNQPIDFKKAVSKWRVENGYLCMTDE-WF----------SEY-VYEVVVDRVLV----PMGA--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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