>PF19175 (287 residues) YKYKCMLRKPSMAMDNTADTQRVTACCTGLFNDETSLNKCAPGWCPDTKLCHDAMISHCS SAFGWQDGSNPRDYSTSSCARYVNNSKKELAADFLQKTLPSAFGSYRLITGEAIPPPIQS LNNYLSDTCKLFPGSCSSFLSGFCQNLSREDMTQSQVYADVCGCYMPESQYPFSDKVPRP CDPICNLPNAIPFATPGSDTEERCTDTVCILDNISIDVKNSSGGKIALNQLCGNSRGKDS KFSQCYFDNVTVDGVNAMLTSGDTIQQGCDICFSGGTAENPNEVSCG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | YKYKCMLRKPSMAMDNTADTQRVTACCTGLFNDETSLNKCAPGWCPDTKLCHDAMISHCSSAFGWQDGSNPRDYSTSSCARYVNNSKKELAADFLQKTLPSAFGSYRLITGEAIPPPIQSLNNYLSDTCKLFPGSCSSFLSGFCQNLSREDMTQSQVYADVCGCYMPESQYPFSDKVPRPCDPICNLPNAIPFATPGSDTEERCTDTVCILDNISIDVKNSSGGKIALNQLCGNSRGKDSKFSQCYFDNVTVDGVNAMLTSGDTIQQGCDICFSGGTAENPNEVSCG | |||||||||||||||||||
1 | 1ktkE | 0.05 | 0.03 | 0.68 | 0.72 | DisCoVER | -----------------G-AVVSQHPSRVIA----KSGTSVKIECRSLDFQATTMF-WYRQFPMLMATSAEGSKATYEQGLINHASLTLST--LT-----------VTSAHPEDSSFYICSALFGP--GT-RLTVLEDLKN--FP---------------PEVAVFEPSEISHTQKATLVCLATFYPDHVELSWWVNGGVSTQPLKRYALSSRLRVSAFWQNPRNHFRCQVQFYGLSE-PVTQIVSA--------EAWGRA-------------------------- | |||||||||||||
2 | 4wz9A | 0.07 | 0.06 | 0.79 | 0.83 | DEthreader | ------------NAFEATALEAGIQI-AGAMENLVTYR-EQALLFNP--ST-YRGKTNVAT-TIAHEYAHQWF-FAYEFYALDMAYPGQEYWELFNQVIQYAMGQDGQTRPMNWLDRVAYDKSGSVL-N-----MMRHVLGD---VLPNVTVAQIMRTWTN-AGYPER---PNTNIWM--IPYNYVFNFFQWLATAARIETWIVFKQQGYYR---------------VNYDNWLIALNASIHNQLDDWLARSG----------RLDLVARFMLAPWTAANVALFM-F | |||||||||||||
3 | 4kc7A | 0.06 | 0.06 | 0.94 | 0.69 | CEthreader | ----------------QPTFRWAVVHDPSIIKVGNMYYVFGTHLQVAKSKDLMHWEQINTSAHDKNPIIPNINEELKETLSWARTRNDIWAPQVIQLSDGRYYMYYCASTFGSPRSAIGIA--VSDDIEGPYKHYAVIVKSGQVYSVDGPSEDGTPYDSRKHPNALDPGVFYDKEGNLWMVYGSWFGGIYILKLDPNTGLPLPGQGYGKRLVGGNHSSMESPDTDYYYLFLSFGGLDYRGGYNIRVARSMENCMGSKTVISNYGAKLVGNFILSESNTIDFKAFGYV | |||||||||||||
4 | 1dkrB | 0.07 | 0.06 | 0.82 | 0.62 | EigenThreader | -------------SNQYGDKNLKIFSLNSNPELAKEIQLGKESIRGCDCYI-------IQSTSDP--VNEHIMELLIMVDALKRASAKTINIVIP---------YYGYARQDREPITAKLFANLLETAG---ATRVIALD-----LHAPQIQGFFDIPIDHLMGYFEGKNLEDDHGGVTRARKLADRLKAPIAIIDKRMNIVGNIEKTAILID-DIID----TAGTITLAANALVE---NGAKEVYACC--THPVLSGPAVERINNSTIKAIIRVHEQQSVSYLF-- | |||||||||||||
5 | 5mv9A1 | 0.09 | 0.03 | 0.36 | 0.23 | HHpred | -------------------------------------------------------------DRLWS-HTREP--LKQA----LLKKGSEELSQEACLAFIKYMGDYP---SKRTR-SVNELTDQIFEGPLKAEPLKDEAYVQILKQLT-----DNHLLWLCTGLFPPSNILVQRFLQSRK----------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3l6aA1 | 0.11 | 0.04 | 0.36 | 0.55 | MRFsearch | -------------------------------------------KEELLKLTETVVTEYLNSG------------NANEAVNGVREMPKHFLPEMLSKVIILSLDR--------SDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLCPKLEVDIPLVKSYLAQFAA------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 4bkxA | 0.11 | 0.06 | 0.49 | 0.42 | FFAS-3D | YQAD----ITDLLKEGEEDGRD-------------QSRLETQVWEAHNPLTDKQIDQFLVVARSVGTFARALDSLHMSAAAASRDITLFHAMDTLHKAISALVPQGGPVLCRDEMEEWSASENLFEEALEKYGKDFTDIQQDFLPWKSLTSIIE--YYYMW------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 7c7lA1 | 0.13 | 0.11 | 0.85 | 0.78 | SPARKS-K | KTLKLRIVRPYNSEKNNREKIALKEACSKHLKVTTQVEACFCKARKLDDKFYQKLRGQF--------PDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANAS------SVEHYLSDVCYTKNAAIASGLRSKIKNFRLKELKNMKSGLP-------------TTKSDNFPIPLVKQYTGFEISNHNSD---------FIIKIPFGRWQVKKEIDFDFEQV-----QKSPKPISLLLSNKGWSKDEGTMNGDYQTSY--IEVKRGSKIGEKSAWMLN | |||||||||||||
9 | 3v09A | 0.13 | 0.05 | 0.36 | 0.69 | CNFpred | ----------------------LKKCCATD-----DPHACYAKVLDEFQPLVDEPKNLV----------------KQNCELYEQLGDYNFQNALLVRYTKKVPQV---------------STPTLVEISRS----LGKVGSKCCKHPEAERLPCSVVLNRLCVLHE------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5vchA | 0.06 | 0.05 | 0.80 | 0.83 | DEthreader | PEIPHDDFLNKSLIPSVQTADLVKLALIA-N-VDDIRVFAQF-TSAVYRKSKIALGPEIT-LAALKVASEEIDNTPATALRLISN-ASGE-LS-PSQVGVPIIEHLP-TL--SSSPERRSILLAIS-VL---VTGSPDYTLSQF-DK---IIPATVTGLACILSTNLQ-DE-------VARYHEQYLVAAGLEFAAIVSAISCAAGG---NTAFEYIFLFLKFQIFAVFEKESERIE----NSTENLEKRKQFQSEEIKQQVIE----------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |