>PF19138 (217 residues) VRMLADERTLKDVMDDFIVASNAADLIHQDALELRTIEESPENSLLVTEDEVVALVRAGN RVGGLSTDDEEFVTTAYDAYMTEWEDAEAFTLRTPPISRVRETLESDISPEAEEDFDNIL ASLETARGDGDGLDEVTISLLVAAKNEALLYDISKWGEDVGIASKATFSRTKTKLEDMGL IDTEKVPIDVGRPRLRLKIGDDRLRNADNGQLATVAQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VRMLADERTLKDVMDDFIVASNAADLIHQDALELRTIEESPENSLLVTEDEVVALVRAGNRVGGLSTDDEEFVTTAYDAYMTEWEDAEAFTLRTPPISRVRETLESDISPEAEEDFDNILASLETARGDGDGLDEVTISLLVAAKNEALLYDISKWGEDVGIASKATFSRTKTKLEDMGLIDTEKVPIDVGRPRLRLKIGDDRLRNADNGQLATVAQ | |||||||||||||||||||
1 | 2dqlA | 0.16 | 0.06 | 0.41 | 0.55 | DisCoVER | ---------------------------------------------------------------------------------------------PP----T--YL---------------------------CQEVAICYILYVLLQGESYGELIQQLEPTYRLSDTVLYSAIKFLEDNRAITGYWKKLERGRPRRMYQVSPEWQHQA-EDLAR-LW- | |||||||||||||
2 | 2c1lA | 0.06 | 0.05 | 0.78 | 0.83 | DEthreader | TLYLISGFSNYNGG--VRFYETFTEHINQGGRVIAILGILHAKLYGTSNNGESLVVSSIEASLLLDNNTQSMGFSWNDMISEMLNIHNMTN---------------------------------LGHADTAIQGTQYF--WL-SKDSYDFFPPLT-IRNRRATYSSLIQCGTKLR-VAIAAITRVG------DSDYELRILDPYAVSFIGNRGKRF- | |||||||||||||
3 | 2qbyA | 0.10 | 0.10 | 0.97 | 0.52 | CEthreader | VIVLDEIDAFVKKYNDDILYKLSRINSEVNKISFIGITNDVKFVDLLDPRVKSSL---SEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKLTLPFHSKLVLMAVVSGAVYETYLNICKKLGVETQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVDKNIIVRSLIESD--- | |||||||||||||
4 | 2qbyB | 0.08 | 0.08 | 0.93 | 0.67 | EigenThreader | KQAYVNCREVGAGKLTGEYIDKIKNGTRNIRAIYLDEVGDIVLYQLLRSDANISVIMISGPSVIFKPYDAEQLKFILSKYAEYG-----LIKGTYDDLLFRAAQLASEHVDKAIVDYEQERLIEAVKA----LPFHYKLALRSLIEVMSAHKMYTDLCNKFKQKPLRFSDIISELDMFGIVKIRIINRGRAGG-VKKYALDK-----EKVLRALNET | |||||||||||||
5 | 4xgcE | 0.13 | 0.11 | 0.85 | 0.31 | HHpred | --------------NVLPVLLRLQELTN-LNLCVILLSQLPFE-KFYNKTGEIVCLHLA------QYNKAETQRILGSDFQQFLSVFYKAC-RDVPEQLTARKCLSTYLEPIAGPLRSALTQIYMRI-ESLELPYYAKFLLIAASHNAAKQDKDRAILEEKVGLTCNLLSQISTLVHLNLLSFVSQNIMEGSARLQCTIGLEFVLQIGK-------- | |||||||||||||
6 | 2fbkA | 0.10 | 0.06 | 0.58 | 0.38 | MRFsearch | ---------------------------------------------------------------------AALLERIRSDWARLNHG------PSAGPMLTLLLLERL-HAALGREIERTYAASGL------NAAGWDLLLTLYRSAPPEGLRPTELSALAAI-SGPSTSNRIVRLLEKGLIERREA---------SIRLTPQGRALVSAQEQRTLEE | |||||||||||||
7 | 1p4xA | 0.13 | 0.11 | 0.82 | 0.63 | FFAS-3D | ---------FKKIVSDLDLVQHIKVLVKHSYISKVRSKIDERNTYISISE-------------EQREKIAERVTLFDQIIKQFNLADQSESQMIPKDSKEF--------LNLMMYTMYFKNIIKKHLT--LSFVEFTILAIITSQNKVLLKDLIETIH----HKYPQTVRALNNLKKQGYLIKERSTED--ERKILIHMDDAQQDHAEQAQVNQLLA | |||||||||||||
8 | 5cwcA | 0.16 | 0.12 | 0.72 | 0.56 | SPARKS-K | -------SEKEELRERLVKICVENAKRKGD-------------------------------------DTEEAREAAREAFELVREAAERAGIDSSLIKECVENAQREYDRAAAEAFKRVAEAAKRAGITSSEVLELAIRLIKECVENEAFKRVAEAAKRAGITSSETLKRAIEEIRKRVEAQREG----------------NDISEACRQAAEEFRK | |||||||||||||
9 | 4f5gA | 0.11 | 0.10 | 0.84 | 0.59 | CNFpred | WLPLIDIQGFGRGLEEDAEGLRAFAAMHKELIVASSCS----MNFGLYNERVGACTLVA--------ADSETVDRAFGQMKAAIRAN----YSNPPAHGASVVATILSNDALRAIWEQELTDMRQR------IQRMRQLFVNTLQEKGANRDFSFVIKQNGMFSFSGLTQVLRLREEFGVYA----------ASGRVNVA--GMTPDNMAPLCEAIV | |||||||||||||
10 | 1p4xA | 0.10 | 0.07 | 0.72 | 0.83 | DEthreader | ----------------DFIIIEAYM-------VKVDMTIKE-LLYLFHQQENTLPFIVQSLVTYISI----S-EEQREKIAERVTLFQIIFNDQSESQMI----------------------KNIIKKHLLSFVTILAIITSQ-NKNIVLKDLIETI---H-HKYPQTVRALNNLKKQGYLIKERSTED--ERKILIHMD-DAQQDHAEQLLAQV-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |