Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | PALPTLLNAVRTICAGQQATFNVQNPVAGVTYNWYDAASGGTLVATGITYSTPNLNSNTSYYVEAALPTGCVSASRAQVSVVVNP |
1 | 1ogpA | 0.12 | 0.12 | 0.95 | 1.33 | DEthreader | | PVQSAICEDVQMVKPG-KVSIKGYAVSRGIRVDISLDGG-KNWVEASFEATID-VSQTTEVIAKAVDSAANVQPSWHRVLLRLG- |
2 | 3pddA1 | 0.16 | 0.15 | 0.93 | 1.33 | DEthreader | | --MVTIDSVAERFEAGKDINISATVKSTPVKVEFYNG---DTLISSDYTAKITAAVGAYNLKAVAVLSDGRRI-ESPVTPVLVKV |
3 | 4ll9A | 0.09 | 0.08 | 0.96 | 1.33 | DEthreader | | SKKPSLSV-GPIVAPEETLTLQCGSDAGYNRFVLYKDGER-DFLQLAANFTLGPVSRGGQYRCYGAHNLSEWS-APSPLDILIAG |
4 | 4of8A2 | 0.16 | 0.15 | 0.95 | 1.33 | DEthreader | | PEAPKITGDVIYATEDRKVEIECVSVGGAAEITWIDGL--GNVLTIYSVLRLTPKHHNTNFSCQAQN-TADTY-RSAKIRVEVKY |
5 | 3pddA2 | 0.11 | 0.11 | 0.95 | 1.33 | DEthreader | | KPTVKLTAKSVVAYGNEFLKITATASDKISRVDFLVD---GEVIGSDYEYEWKAVEGNHEISVIAYDDDDAAS-TPDSVKIFVKQ |
6 | 6ffyA2 | 0.16 | 0.15 | 0.98 | 0.15 | HHpred | | PLQALYLEVVPVIGVNQEVNLTAVLLPNLTVFYWWIGHSLQPLLSLDNSVTT-KFTDAGDVRVTVQAACGNSVL-QDSRLVRVLD |
7 | 3pddA | 0.08 | 0.08 | 0.98 | 0.52 | DisCoVER | | KPTVKLTPKSVVAYGNEFLKITATASDGKISRVDFLVDGEVIGSDREYEYEWKAVEGNHEISVIAYDDDD-AASTPDSVKIFVK- |
8 | 1l6zA2 | 0.12 | 0.12 | 0.96 | 0.73 | MRFsearch | | ---PFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQERMTLSQNSILRIDKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP |
9 | 4u6tA | 0.12 | 0.12 | 0.96 | 0.90 | SPARKS-K | | NSLPYGKINGYKGTEKEKIKFSSFDPDGKIVSYEWDFGDGNKSNEENPEHSYDK-VGTYTVKLKVTDDKGESSVSTTTAEIKD-- |
10 | 2wngA | 0.13 | 0.13 | 0.98 | 0.37 | MAPalign | | -LQVIQPDKSVSVAAGESAILHCTVTIPVGPIQWFRGAPARELIYNQFSISISNITDAGTYYCVKFRKPDTEF-KSGGTELSVRA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|