>PF19050 (541 residues) LKMEEDHAAKWTYAITSHLGCTRFEFLVAGRQETSWRFIAHSGNDFALNVNANERQKLGG MGYMWKDILQKNAECGGFHVQLGLGGQIYADRLWKEIPLLKQWTAMSGKENRKNAPWTAK HEEEVCHAYFHYYTSHFDQPHVREAFAQIPHILALDDHDIFDGFGSYPEYMQFSNMFKNI GRVGIEMYLLFQHHTTLEILRNVSNDMDLFTITGTGWHFIKYLGPCVTIVGPDCRSERNP HQVMAGPTYQGIFPKVATLPPSVQHCIWMIPVPVIYPRLESVEHLANSMATGKKAVTGTF NMLGKVTSSVAGVVGAKSVVGDGFNHVKKAIGKSGLMSGVLSPFGEIDLLDELRDQWTHD SKDLERTYLIRTLQGIAHNKSLRMTFFSGGVDCCGAGLVHDPSKPQDHKTMYQIISSSVV NAPPSNYVLRLLHNNRVLYIPQNGHRSNHQPSDTKEDMMEIFTQDVNGSPREYKRLMGRR NYVACVVYDPEIVNGTFGQVSPGQGSGKLSLAVDFMVQNEGPYSAPMKYGPVIVPSLEYG R |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LKMEEDHAAKWTYAITSHLGCTRFEFLVAGRQETSWRFIAHSGNDFALNVNANERQKLGGMGYMWKDILQKNAECGGFHVQLGLGGQIYADRLWKEIPLLKQWTAMSGKENRKNAPWTAKHEEEVCHAYFHYYTSHFDQPHVREAFAQIPHILALDDHDIFDGFGSYPEYMQFSNMFKNIGRVGIEMYLLFQHHTTLEILRNVSNDMDLFTITGTGWHFIKYLGPCVTIVGPDCRSERNPHQVMAGPTYQGIFPKVATLPPSVQHCIWMIPVPVIYPRLESVEHLANSMATGKKAVTGTFNMLGKVTSSVAGVVGAKSVVGDGFNHVKKAIGKSGLMSGVLSPFGEIDLLDELRDQWTHDSKDLERTYLIRTLQGIAHNKSLRMTFFSGGVDCCGAGLVHDPSKPQDHKTMYQIISSSVVNAPPSNYVLRLLHNNRVLYIPQNGHRSNHQPSDTKEDMMEIFTQDVNGSPREYKRLMGRRNYVACVVYDPEIVNGTFGQVSPGQGSGKLSLAVDFMVQNEGPYSAPMKYGPVIVPSLEYGR | |||||||||||||||||||
1 | 2yeqA | 0.13 | 0.09 | 0.68 | 1.00 | DEthreader | LSDS--EPNKVYYYRFKTLSPVGKTKTLPAANVPQMTFAFASCQQYEHG-----------YYTAYKHMAKEK----L-DLVFHLGDYIYEYGPNETHNSAE-------------------II--TLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYAIPEKGQSV-EAFVLRRAAAYQAYYEHMPLRIS-SL--------PNGPD-MQLYRHFTYGNLASFNVLDTRQYRDDRTLLGKEQEQWLFNNLGSS-T-AHWNVLAQQ----------------------------------IF-FAKWNFGTSASP----------------------------IY--SMDSWDG--YPAQRERVINFIKSK--NL-NNVVVLTGDVHASWASNLHVDEKTSSKIFGAEFVGTSITSGGNGADKRADTDQILKEN----------------PHIQ-F--------------FNDYRGYVRCTVTP-------------------HQWKADYRVMPFVEGAAISTRASFVYQKDQTG- | |||||||||||||
2 | 2yeqA | 0.14 | 0.09 | 0.67 | 1.00 | DEthreader | LSDS---EPNKVYYYRFKSPVGKTKTLPAGANVPQMTFAFASCQQY-EH--------G-Y-YTAYKHMAK-E----KLDLVFHLGDYIYEYGPNETHNSAE-------------------II--TLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYAIPEKG-QSVEAFVLRRAAAYQAYYEHMPLRI-SSL--PN---GPDM----QLYRHFTYGNLASFNVLDTRQYRDDQA-------------------------------NRTLLGKEQEQWLFNNLGS---STAHWNVLAQQI--FFAKWNFGTSAS--------------------------PIY--SMDSWDG--YPAQRERVINFIKSK-N-L-NNVVVLTGDVHASWASNLHDFEKTSSKIFGAEFVGTSITSGGGADKRADTD-I-L-------------K--ENPHIQF----------------FNDYRGYVRCTVT------------------P-HQWKADYRVMPFV-GAAISTRASFVYQKD---- | |||||||||||||
3 | 2yeqA | 0.14 | 0.10 | 0.72 | 4.28 | HHpred | DGLEP--NKVYYYRFKTGHESPVGKTKTLPAPVPQMTFAFASCQQYEHG-----------YYTAYKHMAKE-----KLDLVFHLGDYIYEYGPNEYV-----SKT---GNVRTH-NS-A--EIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPKGQSVEAFVLRRAAAYQAYYEHMPLRISSL----PNG----PDMQLYRHF--TYGNLASFNVLDTRQYRDDQTLLGKEQEQWLFNNLGS--STAHWNVLAQQIFFAKWNF---------------------------------------------------------------GTSA-S-PIYSMDSWDGYP--AQRERVINFIKS---KNLNNVVVLTGDVHASWASNLHVDFKTSSKIFGAEFVGTSITSGGNGADKDQILKEN----------------------------------PHIQ-FFNDYRGYVRCT-VTPHQWKADYVMPFVTEPGAAISTRASFVYQKDQTGL-RKVSGVKQSDEVEE-- | |||||||||||||
4 | 2yeqA2 | 0.14 | 0.09 | 0.67 | 1.32 | DisCoVER | ----------P----------------APGANVPQMTFAFASCQQYEH-----------GYYTAYKHMAKEK-----LDLVFHLGDYIYEYGPN----EY--VS--KTGNVRTHNSAE--II--TLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKI-PEQSVEAFVLRRAAAYQAYYEHM--PLRISS-----LPNGPDM---QLYRHFTYGNLASFNVLDTRQYRDD--QAN--------------------------DGNKPPRTLLGKEQEQWLFNNLGSSTAHWNVLAQQI--FFAKWNFG---------------------------TSASPIYSM-DSWDGYPA--QRERVINFIKS-K--NLNNVVVLTGDVHASWASNLHVDFEKTSKIFGAEFVGTSITSGGNG--AD--KRA-DTDQILK-----------ENPHIQ-FF-------------NDYRGY-VRCTVTP-------------------HQWKADYRVMPFVPGAAISTRASFVYTTIQGG- | |||||||||||||
5 | 2yeqA | 0.14 | 0.09 | 0.67 | 0.67 | MRFsearch | -------NKVYYYRFKTGHLSPVGKTKTLPANVPQMTFAFASCQQYEHG-----------YYTAYKHMAKEK-----LDLVFHLGDYIYEYGPNE--------YVSKTGNVRTHNSAEI----ITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNG----------PDMQLYRHFTYGNLASFNVLDTRQYRDDQALLGKEQEQWLFNNLGS-------------------------------------STAHWNVLAQQI--FFAKWNFGTSA----------------------------SPIYSMDSWDGYP--AQRERVINFIKSKN---LNNVVVLTGDVHASWASNLHDFEKTSSKIFGAEFVGTSITSGGRADTDQILKENPHIQFFND------------------------------------YRGYVRCTVTP-HQWKADYRVMPFVTEPAAISTRASFVYQK---------------------- | |||||||||||||
6 | 2yeqA | 0.12 | 0.09 | 0.70 | 1.67 | SPARKS-K | EADGLEPNKVYYYRFKTGHESPVGKTKTLPAPGAQMTFAFASCQQYEHGY-----------YTAYKHMAK-----EKLDLVFHLGDYIYEYGP--NEYVS------KTGNVRTNSAEIITL-----QDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKQSVEAFVLRRAAAYQAYYEHMPL-----RISSL----PNGPDMQLYR-HFTYGNLASFNVLDTRQYRDDRTLLGKEQEQWLFNNLGSS--TAHWNVLAQQIFFAKWNF--------------------------------------------------------------GTSASPIY---SMDSWDGY--PAQRERVINFIKSK---NLNNVVVLTGDVHASWASNLHVDEKTSSKIFGAEFVGTSITSGGNG-----------------------ADKRADTDQILKENPHI--------QFFNDYRGYVRCTVTPH-------------------QWKADYRVMPFEPGAAISTRASFVYQKDQTGL | |||||||||||||
7 | 2yeqA | 0.12 | 0.09 | 0.76 | 1.55 | MAPalign | EADGLEPNKVYYYRFKTGHELSVGKTKTLPANVPQMTFAFASCQQYEH-----------GYYTAYKHMA-----KEKLDLVFHLGDYIYEYGPN----------EYVSKTGNVRTHNSAEII--TLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKQSVEAFVLRRAAAYQAYYEHMPLRISSLP----------NGPDMQLYRHFTYGNLASFNVLDTRQYRD--DQANNDGNKPPSDES-------------RNPNRTL--LKEQEQWLFNNLG---SSTAHWNVLAQQI--FFAKW---------------NFGTSASPI-------------YSMDSWD------GYPAQRERVINFIKSKNLNVVVLTGDVHASWASNLHVFEKTSSKIFGAEFVGTSITSG-----GNGADKRADTDQILKENPHI----------------QFFNDYRGYVRCTVTPHQWKADYRVMP----------FVTEPGAAISTRASFVYQ---KDQTGLRKVSSTTIQGGV-- | |||||||||||||
8 | 2yeqA2 | 0.12 | 0.09 | 0.72 | 1.23 | CEthreader | --------------------------PAPGANVPQMTFAFASCQQYEHGY-----------YTAYKHMAKE-----KLDLVFHLGDYIYEYGPNEYVSKTGNVR------------THNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNG----------PDMQLYRHFTYGNLASFNVLDTRQYRDDQANNDGNKPPSDESRNPNRT------------LLGKEQEQWLFNNLGSS-------TAHWNVLAQQI--FFAKWNFGTSAS----------------------------PIYSMDSWD--GYPAQRERVINFIKSK---NLNNVVVLTGDVHASWASNLHVFEKTSSKIFGAEFVGTSITSGGNGADKRADTDQ-----------------ILKENPHI--------------QFFNDYRGYVRCTVTPHQWKADYRVMPFVTEPGAAISTRASFVYQKDQTGLRKVSSTTIQGGVKQSDE | |||||||||||||
9 | 2yeqA2 | 0.15 | 0.11 | 0.72 | 1.09 | MUSTER | --------------------------PAPGANVPQMTFAFASCQQYEH-----------GYYTAYKHMAKE-----KLDLVFHLGDYIYEYGPNEYVS-------KTGNVRTHNSAEIIT-----LQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKQSVEAFVLRRAAAYQAYYEHMP---LRISSLPNGPDMQLY-------RHFTYGNLASFNVLDTRQYRDDQANND-----GNKPPSDESRNPNRT---LLGKE----QEQWLFNNLGSS-------TAHWNVLAQQIFFAKWNFGTSASPI------------------------------YSMDSWDG--YPAQRERVINFIKSKN---LNNVVVLTGDVHASWASNLHVDFKTSSKIFGAEFVGTSITSGGNGADK--------------------------RADTDQILKENP-----HIQFFNDYRGYVRCTVTPHQWKADYRVMPFVTEPGAAISTRASFVYQKDQTSSTTIQGGVKQSDEVEEDR | |||||||||||||
10 | 2yeqA | 0.14 | 0.10 | 0.77 | 6.05 | HHsearch | DGLEP--NKVYYYRFKTGHESPVGKTKTLPAPVPQMTFAFASCQQYEHG-----------YYTAYKHMAKE-----KLDLVFHLGDYIYEYGPNEY-----VSKT---GNVRTH-N-SA--EIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPKGQSVEAFVLRRAAAYQAYYEHMPLRISSLP---N-G----PDMQLYRHF--TYGNLASFNVLDTRQYRDDQANNDGNK-----PPSDESRNPNRT--------LLGKEEQWLFNNLGS-------STAHWNVLAQQI--FFAKWNFG--------------------------TS-AS-PIYSMDSWDGYPA--QRERVINFIKS---KNLNNVVVLTGDVHASWASNLHVDFKTSSKIFGAEFVGTSITSGGNGADKR-----------------------ADTDQI---LKEN----PHIQ-FFNDYRGYVRCT-VTPHQWKADYVMPFVTEPGAAISTRASFVYQKDQTGLRTIQGGVKQSDEVEEDR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |