>PF19043 (619 residues) RTFVFITNIPDFLLEPMEVSSNISSRARANRDPRYERLRSLLAANTSGVMIVMHLETRGY ALALYASEQEALAACKTTITPQNGNPPQQYPPLQLRILQRERPAPCEAVYTPTITIEGTT VQKSDLVPTRGLELVYRGRAVARWCPHTQAHEDCLFGTSCHRIHLKAYQHTVRKRPRMDV ITGTGGTANNTTATTTSAIGAIEAEMTREEMEVVRNVTRSTRLTEELLVPAEMQLDFSVY VSITHEEALSLVGNTGSTACSNTIAATATAVRANIVKRVKESCSTYKGPYFIRFAFPGGA PWDWSLHDESEGLPQLRQRAPFPENGAPTPLERDLFCQKLLYHVNQMNKFTTIDAALRAF ETSPRVCEALHQYLQQENDQKDKKEKNSNEDSSGTSTMIELCIRPWLFLPTADMETVVLL EKGGEYIRGVAQRHAALRLMTSATFLQQHQLDFTRYAVIGNNEDPEAEDALEMELRRVGT VVKRGVDTLRRHVRQQCTREKIPSSSAWCIQLAVVIPDGLGMEENNNSGNSNVNGPVSTT TVSGENSTDVGTMHTVVLSLKPYQTALEEFTAIYGTRQDVSSAGNDDNDRVRKEVLWNTK KHPYISLFSRELMERLKRD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RTFVFITNIPDFLLEPMEVSSNISSRARANRDPRYERLRSLLAANTSGVMIVMHLETRGYALALYASEQEALAACKTTITPQNGNPPQQYPPLQLRILQRERPAPCEAVYTPTITIEGTTVQKSDLVPTRGLELVYRGRAVARWCPHTQAHEDCLFGTSCHRIHLKAYQHTVRKRPRMDVITGTGGTANNTTATTTSAIGAIEAEMTREEMEVVRNVTRSTRLTEELLVPAEMQLDFSVYVSITHEEALSLVGNTGSTACSNTIAATATAVRANIVKRVKESCSTYKGPYFIRFAFPGGAPWDWSLHDESEGLPQLRQRAPFPENGAPTPLERDLFCQKLLYHVNQMNKFTTIDAALRAFETSPRVCEALHQYLQQENDQKDKKEKNSNEDSSGTSTMIELCIRPWLFLPTADMETVVLLEKGGEYIRGVAQRHAALRLMTSATFLQQHQLDFTRYAVIGNNEDPEAEDALEMELRRVGTVVKRGVDTLRRHVRQQCTREKIPSSSAWCIQLAVVIPDGLGMEENNNSGNSNVNGPVSTTTVSGENSTDVGTMHTVVLSLKPYQTALEEFTAIYGTRQDVSSAGNDDNDRVRKEVLWNTKKHPYISLFSRELMERLKRD | |||||||||||||||||||
1 | 6r5kD | 0.06 | 0.03 | 0.51 | 0.64 | DisCoVER | ASLYVGDLEPSVSEAHLYDI--------------FSPI---G-----SVSSIRVCRDTSLGYAYVNFNDHAGRKAIEQ------------LNYTP------------IKGRLCRIMWSQ------------------------R-------------------------------------------------------------------------------------DPSLRKKGSGNIFIKN--LHPDIDNKLYTFSGDILSSKIATS--KG--FGF-VH--FEEEGAAKAILN--------GMLL-NGQ----------------------------------------------------------------------------------EIYVAPHLSRDSQLE-ETKAHYTNLY-VKNIDEQFQELFAFG-PI------------V-SASLEKDADGKLKGFGF--VN--Y---E--KHEDAVKAVDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAK---------------YQGVNLFVKNLDDSVDDEKLEEEFYGTITSAKVMRTENGKSKGFGFVCFSAQIVAGKPLYVAI--AQ------ | |||||||||||||
2 | 1kekA | 0.05 | 0.03 | 0.60 | 0.67 | DEthreader | ---NPITPSSTMGEEADD---AAQGRKNQTLTIRETTTFTALLMIPNMVTARA-------SIFGDQDIYAARMMHFFMGSSCETIEEVNK------DRTKDPLY--------YGLGSKEFSPTTTQCNKQAGYFSYDSGGITCHNPAYV--GIYD-ILEG-----TF-V-------LNSPWSKFYNIDAKIAIMIQTAFFKLAGFVLQEFKY-----------------------------------------------KAEP--MTNEFFKNVVKPILTQQGDKL-VFG-F-L--------EKRGVAINVPQWVNQCAFVCP---------H--S-------------------------------------FRIQINTLCGCGNCAMQPLDQR-PMEFSGACEANATG-CSSIWGASAPS--------WGNSLFEDAAEYGFGMNMSMFARR---PKDMSDLYTKKS-VWIFGGDWAYDIGYGGL-----------------------SNTGGCNGMKSVMTAVKS----APDGSVEFLMAQNRFAVLD--------------------------RLRAQVAHELD-R----------------------------- | |||||||||||||
3 | 1vt4I | 0.06 | 0.05 | 0.89 | 0.85 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------------------------------------------- | |||||||||||||
4 | 3opbA | 0.08 | 0.06 | 0.84 | 0.77 | EigenThreader | ST-----PDVQKYNDAINTIFQLILTRSYQDHSESRVHLSKLIQND---------------------IPFALNLFEILSKYNFKEVRILRISE---------DEVKSMMLIIF---------AELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELY-----PSLTTLCSEIFLTKG-----LSKLFKKRVFEEQDLQFTKELLRLLSSACIDENYLQLLERSL--------NVSALVLVKTWSFTKLTCINLKQLSEIFINAIVEMSVEALAYLS---------LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLLLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQG--------------AVKIILEYLA-------NKGEPIRILGCRALTRMLIFTNPGLIFKKPFLFELLPRSTIKLTDNYEALLALTNLASSDGEEVCKHIVSTPLQRSTLELISNMMS--------HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIAKELLKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGDALNMSLKR | |||||||||||||
5 | 4zgnA | 0.12 | 0.05 | 0.43 | 0.87 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRGSHMTLILTKNQ------VLHCQFSSWYLF--RKLTPK-AKVKPIPATVLKYLHEDSI--YVEQA----YYP-EREAIQLIEKAIKELGGAVVPKLNWS--TPKDWIT-------------------------------------TTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKD---------FDNADPKDFSFELVLKEWFPMH-ASTEFRCFVKSK--RLIAFCQRDDN-----YYEFLKE-------------------------N----IDCYE---KLISDLLKK---LDTF-PDPDFVFDVYIHK------------------------------------DRAWLIDINPFYPRTD-GLLFSSE-----LESMNSENM-KPEIRLIPK----ASENLLEFAQKWQD- | |||||||||||||
6 | 4zgnA | 0.13 | 0.05 | 0.39 | 1.10 | MRFsearch | ---------------------------------------------------------------------------------------------------------------------------------------------SSWYSLF----------------------------------------------------------------------------------RKLTPKAKVIKPIPATVLKYLHEDS-------IYVEQAYYPEREAIQLIEKAIKELGGAVVPKLNWS-------------------------------TPKDAL------WITTTGSLKCTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNAD---------PKDFSFELVLKEWFPM-HASTEFRCFVKS--KRLIAFCQRD-----------------------------------------DNYYEFLKENIDCYEKLISDLLKKLDTFPDPDFVFDVYIHK------------------------------------DRAWLIDINPFYPRT-----------------------DGLLFSWSELEKPEIRLILLEFAQKWQDL | |||||||||||||
7 | 7kchA | 0.12 | 0.10 | 0.83 | 0.74 | FFAS-3D | ---ILIAVNPFTRLPHLFNTYMMKQYQDAQPDAAYKAMMEILVSGESGA---GKTETTKQIMQYLAFVGEAFGNAKTV----RNNNSSRFGKF-VEIQFNNG------------KISGAAVRRSRVTQISSPERNYH-----------------CFYQLVAGASPEDAERLKLGPPDSFHYLNQSKCVEVGAIDDCKEYQLTREGITTEEQEAIFRTIAAVQMLEKSLTTRIMKATRSITKILNKSQATDNRD--------SIAKTIYAKLFDWLVNKVNKSIGQDPHSLIGVLDIYGFESFEIN---------SFEQFC---INLTNEKLQQHFNTHVFKMEQAEYRKFVDNIDVLDLIEKKPLGIIALLDEACMLPRSTAESFARKLGDTFNNHRRFSK--------HKFKRTAFTIDHYAGQVADLFLEKNKDFVVPEHQQLLH-------------ASRCAFVSGLFPADFMSIGSQFKLQLAALMETLKL------------TAPHYIRCVKPNMQLKPQIFENKNVLQQLRCSGVLEAVRISCAGFPTRRT-----FEEFLDRFGLL--HEKVACQNLLEGYQIGKTKVFLRA--------GQMAILDTLRSN | |||||||||||||
8 | 5ikyA | 0.13 | 0.11 | 0.90 | 0.58 | SPARKS-K | AAVVHLHTIP-GLNTPIGIGSQRNHIVL----DDYDRIMPTLLDLEPSAILNLSTSARGDRRAS--QSPLRRAHLKRY-------GHAQLAPDVASFS----PGP--------VVFQA-----------GG---GYDNPFLADQLAHFAEVGVRPFNHTIVENSVTLYQSPLVKAGVVDQYHRDPVSGDTSDDSLDVPTRKAIAKLLQAVELAATQLRPTVEKLRDNF----PSCKISLLLPLLVDVAIALLEDALNVFDARVGGVRKACGTGDQVRWLRRELERRGIGIVLRLGMSR------------PDVALFRQAEALAHYPADERLVVDTYRKIEDRLAAHLALAEHVLTAARSPQALNFARELLVPRGYSIEAYDRALEDYSYSVDQFKPLPLYLVGIPCRYNSDYSNVVNLGLRQSPRYSATMALLYHALRELTLELRDRSNASRKPLWTVLETVAPDELAAAIASNYPLGIKLSNGMAQLFHGFVAQIAADPP-----LRLLAITHSRDDGEADPSGIVDKPAKLAYTERQLRINAEQIERLPLLKCFAHSSGATAQQLDVQACRDGERLGLTGDELRAFFDRALLVSFGSLDWLGTSVVVRSLADVLQHC | |||||||||||||
9 | 4hb2C | 0.10 | 0.07 | 0.69 | 0.71 | CNFpred | ----FLQDLAMFLTTYLAR----RALLESD-ESLRELLLNAHQ----YLIQLSKIEERELFKTTLDYWHNLVADLFYEP-----LKKHIYEEICSQLRLV------NMVRPEVLVVENGEIVREFVKESDTIQLYKSEREVLVYLTHL-------NVIDTEEIMISKLARQIDSEWSWHNINTL-----------SWAIGSISGTMSETEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-------------HWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIKYHFVIQQPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLSDLM--QLPNMAWDTIVEQSTANPTLLLDSETVK------IIANIIKTNVAVCT------SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTP---VRGLRTIKKEILKLVETYISKALDDVVKVLVEPLLNA----------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5xjcA | 0.05 | 0.03 | 0.63 | 0.67 | DEthreader | DMKYLALKYMPHAVLLLEMPMPWEQIRDVPVLYSFVQVCRQGYNMNHLDYNFNL---GNAFHLCREVLRLTKLVVDSHVYVDAFQLADGLQIFVTMYRYKYT-QRDKT--KK----------SRLNQSQREGIEFMVPVYDVEPLEKDYTAKNNVVINYKDMNRG--RRQILMASGIIQTRIK-IGL-N---SKMPSRFPP-MS---------NAQRSGLNQIPNR-----------------------DLCQVFDQELDAL--V-KIAMKIMKANPLYVLREIRKLQLYSSEPTEPYLSS-----------------DDTNVYR-------AIFIFNPRTGQLFL-----LIRSLPVEEQ-PKQI--LPLEVHLLDFP----------------------PQMVLFNL-----YDDWLKTI---TAFSRLIL-ILRA-------------------LHV-----NND-RAKVILKPDKTTI------------------------TDEEWIEVQLKDLILA--------------DY-GKKNNVNVASLTQSEIR-------------IKETGYTYQVKKTIIITAYRVQM--------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |