Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | LEPFTNFAPPAQDDVFLALTMPDVGALGESSNKTNIYGNCLVELSLDVTFLTKPVGHEHLEKTIPLVKADLSSINQYSYSR |
1 | 2vkyB | 0.03 | 0.02 | 0.73 | 0.64 | DisCoVER | | RPIF--TEA----VANGKIYIGQIDPVPANQIQPLIINAAGKIVQGHSMAIYDAN---QVDYIA------------NVLK- |
2 | 6damA | 0.03 | 0.02 | 0.90 | 0.83 | DEthreader | | GWYSYDVYYGSGNDINEVALVD-QEIKQMRKTAVHFDRKNQPVSYSYFDAT----T---GKIIWSVWSGSLFYGKAVDAKT |
3 | 5g52B | 0.09 | 0.09 | 1.00 | 0.49 | CEthreader | | MEVRVQINSNKFQVGQLQATWYYSDHENLNIDHALISASASNEAKLVIPFKHVWTTGILDMGALNIRVIAPLRMSATGPTT |
4 | 4dt4A1 | 0.04 | 0.04 | 0.90 | 0.53 | EigenThreader | | SHMSESVQSN----SAVLVHFTLKLDDGTTAESTLFRLGLLGLKVTTFSLEPDAAFLAGQTVHFDIEVL----EIDPALEA |
5 | 7k1sA | 0.07 | 0.06 | 0.88 | 0.32 | HHpred | | ------EGQLGTDNELI-MSRDLLEPCVANHKRYFLFGHHYVYYEDYRYVREIAHDVGMISTYVDLNLTEFMPLQVYT--- |
6 | 4hspA | 0.15 | 0.07 | 0.51 | 0.53 | MRFsearch | | ---ACIHVPPPPSNQIVYVKTAKG-------VQDELYQPFWVEGTFKVENA------------------------------ |
7 | 6sn9A4 | 0.09 | 0.09 | 0.99 | 0.27 | FFAS-3D | | FNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYT- |
8 | 7jqeA2 | 0.17 | 0.16 | 0.94 | 0.68 | SPARKS-K | | SNVISDVAPTSTKEDPTTVTISNVSGGTDNSVSKTISK----AQSLKISYTFDSLSVGTHTITLDLNIGD-NRIPTYTIYV |
9 | 5i4mA | 0.10 | 0.05 | 0.48 | 0.59 | CNFpred | | --------------AAFELHIEQGPILEAEMKTIGVVTDAQGQRWYEITFTGQ---------------------------- |
10 | 2olsA | 0.12 | 0.11 | 0.90 | 0.83 | DEthreader | | ASLGIVPGM-AADISV-AVRSSAT-A--FAGQQETFL-NINGLVKMHVSLNAIRVFDIV-ALSAGVQRMVRSSLGWLQAR- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|