>PF18975 (343 residues) QNKVYSSYEVISSIERKDTATTKYKDYNGKIIKYGMDGASCTDADNTALWNQTYEMQNPI IDICENYIAIGDKKGNSIYVFNAEGLQGEIDTLMPIQQIEVSSQGVVAAVLEDGEVTWIN FYDKEGKLLVDNKTTMSNSGYPMDIALSNDGEKLAISYLLVNSGVIKTNIAFYNFGSVGQ NELDNLVSGYEYDKTVVPSVEFLNNTTAAAFGDNEISLYVGSQKPVVSGKIEVKDEIKSI FYSEEYIGLVFDNDDIENRYRMVIYDLNCKKIMEKAFNRDYDTIKIEGKKIVLFNELECS IYNFRGIEKFHSAFDNEIIDVIPVSGFNKYLIINASETEKIRL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QNKVYSSYEVISSIERKDTATTKYKDYNGKIIKYGMDGASCTDADNTALWNQTYEMQNPIIDICENYIAIGDKKGNSIYVFNAEGLQGEIDTLMPIQQIEVSSQGVVAAVLEDGEVTWINFYDKEGKLLVDNKTTMSNSGYPMDIALSNDGEKLAISYLLVNSGVIKTNIAFYNFGSVGQNELDNLVSGYEYDKTVVPSVEFLNNTTAAAFGDNEISLYVGSQKPVVSGKIEVKDEIKSIFYSEEYIGLVFDNDDIENRYRMVIYDLNCKKIMEKAFNRDYDTIKIEGKKIVLFNELECSIYNFRGIEKFHSAFDNEIIDVIPVSGFNKYLIINASETEKIRL | |||||||||||||||||||
1 | 6oc5A | 0.07 | 0.07 | 0.99 | 1.50 | DEthreader | NASNVKNLQVAWTFSTGVLRGHESPLVVIMYVHTPFPIVYALDLGAKIVWKYEPQVTVNRGLAYAGAILLHQA-DTTLVSLDAKGVNWSVKNGDTNTATVLPVKDKVIVGISGGVQCHVTAYDLKGKKVWRGYSIGWKGGGCTGWFSYDPDLMYYGSGNPSTWNPRNSMTIWARNP-DT--G-MAKWVYQMTPDFDGINEMILTPLLTHFDRNGFGYTLDRATGEVLVAEKFDVVPTKQPAAFPGLFYVPTNHVYPGGMGNFIAWDNLGKIKWSNPEQFSAWGGALATAVVFYGTEGFLKAVDSKGKELYKFKTPSGIIGNVMTYEQHVAVLSGGGQLTVFSL | |||||||||||||
2 | 6zcvA | 0.10 | 0.10 | 0.98 | 1.50 | DEthreader | -VNNVKELRPVWAFSFGEKQGQAQPLIKGVMYLTGSYRVFAVDATGKKLWQYDALIVINRGVALYNLVFFGTL-DAKLVALNKDGKVWSKKVADYISAAPMIVNGKLITGVAGGVVGKIQAYNPEGELLWMRPTVEGWGGAAWLGGYYDPNLILFGTGNPAPWNSRNSSSRLALNPDD----GTIKWHFQSTPDFDGVNELISFNAAATADRNGFFYVLDRTNGKFIRGFPFVKPAKNMPMAYKGLFYVPSNEPLNEYIGVLRAIDPVGKEVWRHKNYAPLWGGVLTTNLVFTGTPGFLQAFNAKGDKVWEFQTGSGVLGSPVTWEMQYVSVVSGGMLWTFKL | |||||||||||||
3 | 5oqlA | 0.11 | 0.10 | 0.92 | 2.05 | HHpred | ------DFNLIHTLSISQNDFVTINKSGEWLAFGASGQLLVWEWQESYILKQQDAMNSLVYSPDGQRIVTAADD-GKIKVWDVEGFIVTFTHTSGVTACEFAKKGSVLFTAS--LDGSVRAWDLIYRNFRTFTAP--ERLSFTCMAVDPSGEVIAAGSID---S---FDIHIWSVQT------GQLLDRLSGHEGPVSSLAFAPDGSVLVSGDRTARIWSIFSRTQTSEPLQLQSDVLDVAFPDKQIAIS-T-----LDGQLTFWSVSAQQVSGVDGRKNFNTIRYSGTCLLAGNSKYICLYSTTMVLLKKFTVEVRVSGVAFSPTGNSFCAASTEGLLVYSL | |||||||||||||
4 | 2ymuA2 | 0.12 | 0.09 | 0.79 | 0.52 | DisCoVER | -HMGV--K-ERNRL-E---------------------------------T-G-HSSSVWGVAFSPQTIASASDDK-TVKLWNRNQHLQTLTHSSSVWGVAFSPDQTIASASDD---KTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASD------D-KTVKLWNR--NG-----QLLQTLTGHSSSVWGVAFSPDQTIASASDKTVKLWNR--NGQLLQTLTHSSSVRGVAFSPQTIASASD-----D-KTVKLWNRNGQLLQTLTHSSSVRGVAFSPQTIASASDKTVKLWNRNGQLLQTLTHSSSVWGVAFSPDGQTIASASSDTVKLW-- | |||||||||||||
5 | 2ymuA | 0.12 | 0.10 | 0.90 | 0.38 | MRFsearch | ----------LQTLTGHSVRGVAFSPDGQTIASASDKTVKLWNRNGQLLQTLTGSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGSSVWGVAFSPDGQTIASASD--DKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASD-------DKTVKLWNRN-------GQLLQTLTGHSSSVNGVAFRPDGQTIASASKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNRNGQHLQTLTGHSSVWGVAFSGQTIASASDKTVKLWNRNGQLLQTLTGHSSVRGVAFSPDGQTIASASDKTVKLWNR | |||||||||||||
6 | 2ymuA | 0.12 | 0.11 | 0.92 | 1.51 | SPARKS-K | VKLWNRNGQLLQTLTGHSSSVNGVAFRPDTIASASDKTVKLWNRNGQLLQTLSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQHLQTLHSSSVWGVAFSPDGQTIASASDDK--TVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDK-------TVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDDTIASASDKTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPQTIASASDDK------TVKLWNRNGQLLQTLTHSSSVRGVAFSGQTIASASDDTVKLWNRNGQLLQTLTHSSSVWGVAFSPDGQTIASASSDKTVKLWN | |||||||||||||
7 | 5mzhA | 0.09 | 0.08 | 0.90 | 0.39 | MAPalign | -------FTLFKVLRAHILPLTNCAFNKDRFITGSYRTCKVWNTTGEEVFTLEHKNVVYAIAFNGDKIVTGSFD-KTCKLWDAGQLYYTLKHQTEIVCLSFNPQSIIATGSMD---NTAKLWDVTGQERATLAG-H--RAEIVSLGFNTGGDLIVTGSFD-------HDSRLWDVR------TGQCVHVLSGHRGEVSSTQFNYGTLVVSGSICTSRLWDVRS-GRCLSVKQHTDEVLDVAFDGTKMVSASAD------GSARLYHTTGVCQHTLVHEGEISKVAFNGTRLITASSKTCRLWDCTGECLQVLEHTDEIFSCAFNYEGDFIITGSKNTCRIWKA | |||||||||||||
8 | 6g6mA | 0.07 | 0.06 | 0.90 | 0.34 | CEthreader | -------GQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSVKVWDIKTGQSLRTLQGHQSASLQFNDNIVVSGSDD-STVKVWDIKTGLRTLQGHQSAVTSLQFNDNIVVSGSDD---STVKVWDIKTGQSLRTLQGH--QSAVTSLQF--NDNIVVSGSDD-------STVKVWDIKT------GQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSD------DSTVKVWDIKGQSLRTLQHQSAVTSLQFNDNIVVSGSDSTVKVWDITGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDI | |||||||||||||
9 | 2ymuA | 0.13 | 0.12 | 0.96 | 1.04 | MUSTER | DDKTV-NGQLLQTLTGHSSSGVAFSPDGQTIASASDDTVKLWNRNGQLLQTLTSSVNGVAFRPDGQTIASASDDK-TVKLWNRNGQLLQTLTSSSVWGVAFSPDGQTIASASD--DKTVKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTNGQLLQTLTVRGVSPDGQNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNRNGQLLQTLTHSSSVRGVAFSGQTIASASDKTVKLWNRNGQLLQTLTHSSSVWGVAFSPDGQTIASASSDK--TVKL | |||||||||||||
10 | 5a1uD | 0.11 | 0.10 | 0.92 | 0.73 | HHsearch | ---MPLRLDIKRKLTARSVKSVDLHPTEPWMLASLYNGVCVWNHTQTLVKTFELPVRAAKFVARKNWVVTGADD-MQIRVFNYNLEVHMFEHSDYIRCIAVHPTQPFILTSS--DDMLIKLWDWDKSCSQVFEGH---THYVMQIVINPDNNQFASASLD-------RTIKVWQLGS------SSPNFTLEGHEKGVNCIDYYSGGDYLISGDRLVKIWDYQNKT-CVQTLEHAQNVSCASFPELPII-ITGS----EDGTVRIWHSSYRLESTLNYMERVWCVASGSNNVALGDEGSIIVKLGNGKIIWDMGCEIYPQTIQHNPNGRFVVVCGDGEYIIYTA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |