>PF18949 (641 residues) KQVELVFDYRDLLQVAAYKNHPQQYVRDELVKMKAAGIGSMAVYETSLQELKWGGRISLY SSATLSDLQGKPLKQDENFTYLLFNSKPDEDALRPVIEDTFKQWGIATAPWSFKGNNGLA IETPVEDAMLKTMQTDPAAVQMLHDAGFRIVPRLSDRIPYNAEEVDKLMASYEALGVTRI LFDGNAVKGFADNAEKKTLTHFAETLNKHGIGISTIENSKPQQGLGTLAYLTHYNVARLY SLPDKDAAGMKPLDIADRFQLAVKDRSIRMFYINAAPASNAAKSSITDPMDNIYKSLEGK DGFLAKLDKLGYEPGPALPFDYESPSWLKPLKALVALGAVAFIALLIQVFLPGVAIPVFL IGLIGSAGLYVLSKSIFEQGLALGAAISAPTLAMVWAIRRVRTHTVGNRRPIGATDGNAA ARADGQLRWIFPGITAGRRLLMAVAIFATTSVISLCGIPFVVGLLNNITYKLVLEQFRGV SLLHLAPIALTALYLLLYTGDSVIGNIRKLLKMQITVLWVAVAAVVGVLGLYYLSRTGNE GSASTIELTFRNFLETTFGVRPRTKEFLLSHPLFFAGLFLALRYRAAWVLFIVGSIGQLS MVDTFAHIHTPLAISIIRDLLGLVLGALIGLVLIGVWQVLE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KQVELVFDYRDLLQVAAYKNHPQQYVRDELVKMKAAGIGSMAVYETSLQELKWGGRISLYSSATLSDLQGKPLKQDENFTYLLFNSKPDEDALRPVIEDTFKQWGIATAPWSFKGNNGLAIETPVEDAMLKTMQTDPAAVQMLHDAGFRIVPRLSDRIPYNAEEVDKLMASYEALGVTRILFDGNAVKGFADNAEKKTLTHFAETLNKHGIGISTIENSKPQQGLGTLAYLTHYNVARLYSLPDKDAAGMKPLDIADRFQLAVKDRSIRMFYINAAPASNAAKSSITDPMDNIYKSLEGKDGFLAKLDKLGYEPGPALPFDYESPSWLKPLKALVALGAVAFIALLIQVFLPGVAIPVFLIGLIGSAGLYVLSKSIFEQGLALGAAISAPTLAMVWAIRRVRTHTVGNRRPIGATDGNAAARADGQLRWIFPGITAGRRLLMAVAIFATTSVISLCGIPFVVGLLNNITYKLVLEQFRGVSLLHLAPIALTALYLLLYTGDSVIGNIRKLLKMQITVLWVAVAAVVGVLGLYYLSRTGNEGSASTIELTFRNFLETTFGVRPRTKEFLLSHPLFFAGLFLALRYRAAWVLFIVGSIGQLSMVDTFAHIHTPLAISIIRDLLGLVLGALIGLVLIGVWQVLE | |||||||||||||||||||
1 | 3aqpA | 0.11 | 0.08 | 0.74 | 1.25 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------APEEPKVRLGLD-------LKGGLRIVLEADV-ENPTLDDLEKARTRINALGVALIQIQGQELPGLSQAD----QDRALKLIGQRAVLEFRIVKEGATGTTVAQINQA---LRENPRLNREELEKDLIPEGAKKFEEVTRQKRLAIVLDRVYTAPVIRQAITGGQAVIELSSVEEASEIALVLRSGSLPVPLRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYGPHLGLVASLGLLYTSALILGLATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKK---------------------LRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLAPNVEVETLRRFLEEKGNAVMAVLVGLGLILLYVAFRFDWTFGVASILAVAHDVAAGMYSLLGLEFSIPTIAALLTIVGYSI------NDSIVVSDRIRENLVNRSINQTLSRTVMTSLTTLLPIFVGIFVGTYSIYVVSAL- | |||||||||||||
2 | 7d3uD | 0.11 | 0.06 | 0.50 | 1.19 | CNFpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------AVPLLTAGVLVAVA------------------RTRLILTVLFAVLGT---------------QLAAAVAT-GSVVVHQVA--LWAPG-----------------VSIPFVLDMF---------------------------------------------------SALMLTVTSLLTLTCAAFAVAAGEAYKRFYPPLVLLVTAGVNGALLTGDLFNFFVFVEVMLLPSYGLMMITRSGRA---------------------------------SVVGVAASRLYISVNLLASTILLIGVALIYGTVNIAQLHGAA-TAVAVATALVLFALAIKAAV--PVHGWLARAYPKMSPAVTAMFSGLHTKIAIYAIYR----------------IYAVIFDGD-LWVGVVVFSATMLIGVLGAVGEAAPRSILAFHMVSQIGYILLGVALFIGLTAGIFYLLHHMIVKAALFLAIGAIEVRYG | |||||||||||||
3 | 4mt1A2 | 0.07 | 0.04 | 0.50 | 0.61 | DisCoVER | -------------------------------AKFFI---------------------------------------------------------------------------------------------------------------------------------PIFAWVISIFIIAGIFGISLPVSQYPTSKFVEISIEKVIHTL-ISLLGGFAFISYMGMSI-NVL-TMFAMILVIGI----------------------VVDD----AIVVVENVEIMAGEGLPPKEATKKAMGQI------------------------SGAVI-GITAVLISVFVP-LA-MF---GAAGNIYKQFALMAIAFSAFLALTLTPTFRMYIGLAVVGVF-LFMRL------------PTSF------------L-PTEG--------------SQTLILYGLAVAAVFLVLLYESWSIPLA--VILVIPLG-LIGAAAGVTRNLFE--VPS--FA---------NDIYFQVGFVTVMGLSAKNAILRRPI-----------------MTS--FA-FILGVVPLYIAAASSASQRAIGTTVFGMLVGTLLSVFLVFYVVVRKF-------------------------- | |||||||||||||
4 | 6rc9A1 | 0.07 | 0.04 | 0.58 | 0.67 | DEthreader | -----------YRNTSFSVELVPRSV-----------------LGLPQFGDFGSPTPWRPATEQ--K--------PSWRTPK-----------WKARDVLLQTTGFFNPPFDG--TVADNEKTGF--G-SA---ASHTAPLSIGWPFEYVTGDATVPRLLYELESNLNLVAQGGLLREDLQL---WANRPDLPYYFHNNPD-SGMWA-------SNKLLSADFV--------------NSLFA---A--ILNP-------------------------------------------W--FSPTLSRF----S----------LV---G--SVLDQVLDY----------------PWIGNGYRYGNN--------------------------------------------------------------------------------RS-FLPTFSNIGVGLWTADWPNALSFTNKNNAQRQLRGSIPVLVNRSGSNKFQDQKWSAEGTRAGSGSNTTSSPGIGFITPGLAWTPQDV--SFQLGGWLVTFTDF-KPRAGYLGLQLT-GLDASDATQRALIW--QVRTKLRQSFG------------LLSPVEKVSGWLVGQLPTNTGNGRLSES-A----- | |||||||||||||
5 | 4f9dA | 0.09 | 0.05 | 0.64 | 0.49 | CEthreader | QWPAVWAPVGSWVVKFGDELVDREYFWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAA---EYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAWARFKSRALTDFTLELSARVKAIRGPNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAISSQQLAHWMSLLQLNGVKNYGYYP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3nzpA | 0.07 | 0.04 | 0.60 | 0.82 | EigenThreader | PLLLRF---------PHLIQKQIENIYGNFNKARKEFGYKAVYPLKVN-------QY-------PGFVKNLVKLGKDYNYGLEAGS----------------------------------------KAELLLAAYNN----------EGAPITVNGFKD--RELINIGFIAAE---GHNLTIEG------------LNELEAIIDIAKPKPNIGLRVRLHSAKFGVNLLKENKLLFTIHFHLGS---QITEIKALNEAGNIYTELRKLKAINLGGGLAVEYSQFSRNYT--LREYANDVVFILKNIAEQKKDLEPEYAENKLILKKQNP----KLIDELYDLYKSI-----KPSNEYLHDSIDHLESILTLFDVDLQDRSNAEILTHLITKKAILLLGEVFWGLEQNFPIPLDREISYS-----KDKPLFLHDVDV-----------------------------EQSILDTLEDLDYDIH-------------------AIDILNERISNSKLVNDKQKKHILGELYLFLN-----DNGYLKSI------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 2qv5A | 0.11 | 0.04 | 0.34 | 0.51 | HHpred | -----------------------------------------------------LGQLPVVGADGLRPYARPWSGARGTRVAIVVGGGLSQTGSQKAIR-DLPP---EVTLG--------FAAS--GN-------SLQRWMQDARREGHEILLQIFGYAGDPAKVNIDRLHRSMAKNYTGVMNLGGRFLAEQ-----SALEPVMRDIGKRGLLFLDDG-SSAQSLSGGIAKAISAPQGFADVLLDG---EVTEASILRKLDDLERRNGQAIGVASAFD--E---------------SIAAISKWSREAGGRGIEIVGVSAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 4mt1A2 | 0.12 | 0.06 | 0.51 | 0.42 | MRFsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------DRPIFAWVISIF------------------------IIAAGIFGIKSLVSQYPSVA-----------------------------------------------------------------------------DTSKFVEISIEKV------------------------IHTLIEAMVLVFVVMYLFLYTLIPTIVVPISLLGGFAFISYMSINVLTMFAMILVIGIVVDDAIVVVENVERIMAG------------------------EGLPPKEATKKAMGQISGAVIAVLISVFVPLAMFSNIYKQFALTMASSIAFSAFLALTLTPALCATGFTHGYEGRVAKVLR--KTFRMMVVYIGLAVVGVFLFMRLPGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGDIYFQVGFVTVMGLSAALEAARLRFRPIIMTSFAFILGVVTTVFWGMLVGTLLSVFL | |||||||||||||
9 | 6vejA | 0.11 | 0.09 | 0.84 | 1.17 | FFAS-3D | KTMVIQTRWDDTLEQVTD------RIEKKLEELDSPGESTVFVKAGDIPDIWYQ------VRKKISDIQNDEFGDVFGSVYAFTADGLDFRQLRDYVEKVRLDIDLGKVQMIGAQNEVIYLNFSTRKLAALGL---------------------------DQRQVVQSLQAQNAVTPSGVVEAGPERISVRTSGNFRSEKDLQAV---------NLRVNDRFYRLSDLASISRDSLFRYKG-----------------------EPAIGLAV---------AMKEGGNILEFGEALNARMQEITGELP-VGVGVHQVSNQAQVVKKAVGGFTRALFEAVVIVLIVSFVSLGLRAGLVVACSIPLVLAMVFVFQRVSLGALIIALGLLVDDAMITVEMMITRLELGDSLHDSA---------------------TYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALLLSWIVAVLFAPVIAVHILPKTFDSLLHLAMRRRWTTIFLTALLFGVSLFLLLVDLNLPQNSSIHETRAVMDRLEATLKDDEDIDHVPLMLFLMATFLMIQLQSVQKLFLVASAILGILALINSVILVTQPILLTAAAASGGIVAATLLTLIFLPALYVA- | |||||||||||||
10 | 7abhu | 0.10 | 0.08 | 0.80 | 0.67 | SPARKS-K | DESEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK--------------AREFG------AGPLFNQILPLLMSPTL-------EDQERHLLVKVIDRILYKLD-------------------------------------------------DLVRPYVHKILVVIEPLLI----------------DEDYYARVEGREIISNLAKAA-------------GLATMISTMRPD--------IDNMDEYVRNTTARAFAVVASALG----------IPSKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRVEIIEHGLVDEQQKVRTISALAIAALAEAFDSVLKPLWKGIRLAAFLKAIGYLEYANYYTREVMLILIREFQEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDAEQYRKMVMETIEKIMGNLEEQLIDGILYAFQEQTNGFGTVVNALGKRVKCGTVLWRLNQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEE----YPEVLGSILGALKAIVNVPIKDLLPRLTPILKNENCIDLVGRIADRWMRICFELLELLKIRRATVNTFGYIAKAIG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |