>PF18861 (184 residues) PSPDGSPNITSVSHNSVKVKFSGFEASHGPIKAYAVILTTGEAVHPSADVLRYTYEDFKK GTSDTYVTYLITTEEQKRSQGLSEVLKYEINVGNESTTHGYYNGKLEPLGSYRACVAGFT NITFNPHSDGLIDGNESYVSFSRYSDAVFLPQDPGVICGAVFGCIFGALVIVAVGGFIFW RKKR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PSPDGSPNITSVSHNSVKVKFSGFEASHGPIKAYAVILTTGEAVHPSADVLRYTYEDFKKGTSDTYVTYLITTEEQKRSQGLSEVLKYEINVGNESTTHGYYNGKLEPLGSYRACVAGFTNITFNPHSDGLIDGNESYVSFSRYSDAVFLPQDPGVICGAVFGCIFGALVIVAVGGFIFWRKKR | |||||||||||||||||||
1 | 5u8qA3 | 0.12 | 0.07 | 0.53 | 0.58 | DisCoVER | PSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQKYA-----------------YPFFESRVDN-----------KERTVISNLRPF-------------TLYRIDIHSCNHE---------AEK-LGCSASNFVFAR--------T---------------------------- | |||||||||||||
2 | 4j5tA | 0.06 | 0.05 | 0.77 | 0.83 | DEthreader | QTSL-WA--------------MRPRYVHESPLIMGIMWFNSLSQDGLHSLRHFATPQDLQEKNNLLTVYF-----K-----SKNGNWSVRVQG-----------EPLPKSTASVVLYFSQNGGKSSLAMFGSLQIPDEVARFQVLTKTFDKDGFQ-FD--ITY-I--SNLGGIGTSVPRGFYDR | |||||||||||||
3 | 2ibgA1 | 0.18 | 0.11 | 0.61 | 0.49 | CEthreader | TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKN-------------------WQTTNDNIPYGKPKWNSELGKSFTASVTD-----------LKPQHTYRFRILAVYSNN--------------DNKESNTSAKFYLQPGAAL---------------------------- | |||||||||||||
4 | 2e74C | 0.08 | 0.08 | 0.91 | 0.78 | EigenThreader | HLAAKPAEVEVPQDTVAVVKIPYDTKLQQGLNVGAVLMLPEGFKPEERI---PEELKKEVGQDNVLLVGPLPG---------EQYQEIVFPVLSPNPT----TDKNIHFGKYAIHLGANRGRAGPELIEALTNNPNVGGFGQDDTEIVLQDPNRVKWMIAFICLVMLAQLMLILKKKQVEKVQA | |||||||||||||
5 | 2ibgA1 | 0.18 | 0.11 | 0.61 | 0.56 | HHpred | TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDN-----------------IPYGKP--KWNSELGKSFTASVT-----------DLKPQHTYRFRILAVYSNNDN--------------KESNTSAKFYLQPGAAL---------------------------- | |||||||||||||
6 | 2ibgA | 0.18 | 0.10 | 0.58 | 0.35 | MRFsearch | --PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGK-------------------RKNWQTTNDNIPYGKPKWNSELGKSFTASVT-----------DLKPQHTYRFRILAVYSNNDNKESN-----TSAKFYLQP----------------------------------------- | |||||||||||||
7 | 2ibgA1 | 0.18 | 0.11 | 0.59 | 0.92 | FFAS-3D | TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTND-------------------NIPYGKPKWNSELGKSFTASVTD-----------LKPQHTYRFRILAVYSNNDN--------------KESNTSAKFYLQPG------------------------------- | |||||||||||||
8 | 3f7pE2 | 0.16 | 0.10 | 0.64 | 0.87 | SPARKS-K | PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVN------------------------------------DDNRPIGPMKKVLVDNPKNRM-LLIENLRESQPYRYTVKARNGAGWGPER-------EAIINLATQPIPIVDAQSGEDYDSFLM---------------------- | |||||||||||||
9 | 3eh1A | 0.16 | 0.10 | 0.61 | 0.63 | CNFpred | --------IRCTKGLSMHTFHGNFFVR--STDLLSLANINP----------------------DAGFAVQLSIEESL-------TDTSLVCFQ---TALLYTSS----KGERRIRVHTLCL----------------PVVSS----------LADVYAGVDVQAAICLLANMAVDRSVSSSLSD | |||||||||||||
10 | 4u33A1 | 0.08 | 0.06 | 0.71 | 0.83 | DEthreader | PGVEIDVAPVAKAVEVVPVSAA-VWREGEAV-AATLVVRYLG---------------------KPLL-IPMTS--G---Q--EPF-VFHGQFT-----------PDRVG-LWTFRVDGWGDPILRAATGVYPLR--DLVTRGE-QFGVWVDRPLARFGA-WY--EM-F-PRSTGG-WDDDGNP- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |