Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YTYYLLALNRDSMKLYFVDNKEISEVALPDDAPIDVKTALGDELTGGNLNYSSQGSQTGSKEGVAYHGVNAKDEEVEIDWVNYYQAVDTFFKDTFNNAENYPLYLYALPENQTMFKKYAKTPYYRADAAISGSPAQLDIQKIQADLAEIT |
1 | 4crnX2 | 0.11 | 0.09 | 0.83 | 1.17 | DEthreader | | DKFGFIVMDGQGTLFGSVSGNTRTVLHK----FTVDL--P-K-KHG-GGQS-----------------ALRFARLREEKRHNYVRKVAEVAVQNFITNKNVGLILAGSADFKTDLASLFDPRLAKVISIVDVSYGGENFNQAIELSAEAL |
2 | 1dt9A | 0.07 | 0.06 | 0.81 | 1.00 | DEthreader | | SKFGFIVIDGSGALFGTLQGNTREVLHK----FTVDL------PKKH-------------------QSALRFARLRMEKRHNYVRKVAETAVQLFISVNVAGLVLAGSADFKTELSSMFDQRLQKVLKLVDISYGGNGFNQAIELSTEVL |
3 | 4af1A | 0.15 | 0.12 | 0.82 | 1.02 | HHpred | | GLYGLIVLDRRESNVGWLKGKRVQPVKSASLVPG------------KQ----RKGG----QSAQRFA------RLRLEAIDNFYQEVAGMADDLFVPHEIDGILVGGPSPTKDEFLDYLHHEDKVLG-KFDVSYTESGLSDLVDAGQAAL |
4 | 4af1A3 | 0.13 | 0.11 | 0.81 | 0.99 | DisCoVER | | GLYGLIVLDRRESNVGWLKGKRVQPV-K---SA-ES--LV--------P----------GKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFKRHEIDGILVGGPSPTKEFLDGYLHLQKVL--GKFDVSYTDEGLSDLVDAGQAA- |
5 | 4af1A | 0.13 | 0.11 | 0.83 | 0.75 | MRFsearch | | -LYGLIVLDRRESNVGWLKGKRVQPVKSA--------------------ESLVPGKQRKGGQSAQR-----FARLRLEAIDNFYQEVAGMADDLFVPKRIDGILVGGPSPTKDEFLDGDYLHHELQDGKFDVYTDESGLSDLVDAGQAAL |
6 | 4af1A3 | 0.13 | 0.11 | 0.81 | 1.04 | SPARKS-K | | GLYGLIVLDRRESNVGWLKGKRVQPVKSAES-----------LVPGKQ-----RKGGQSAQR---------FARLRLEAIDNFYQEVAGMADDLFVPKRHEGILVGGPSPTKDEFLDG---DYLHHEGKFDVSTDESGLSDLVDAGQAAL |
7 | 4af1A | 0.14 | 0.11 | 0.82 | 0.97 | MAPalign | | GLYGLIVLDRRESNVGWLKGKRVQPV-K----SAES--LV------------------PGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFVPKEIDGILVGGPSPTKDEFLDYLHLDKVL--GKFDVSTDESGLSDLVDAGQAAL |
8 | 3agjB | 0.08 | 0.06 | 0.77 | 0.90 | CEthreader | | GTAVIAAVDYDEFALAVLAGHGMKILEDTSA-----------------------------------RLPGKDDPSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQMPSLKVATVDTSMGGVAGVREALRRESVTR |
9 | 4af1A3 | 0.14 | 0.12 | 0.83 | 0.86 | MUSTER | | GLYGLIVLDRRESNVGWLKGKRVQPVK----------------------SAESLVPGKQRKGGQ---SAQRFARLRLEAIDNFYQEVAGMADDLFVPKRHEIILVGGPSPTKDEFLDGDYLHHELQDKKFDVSTDESGLSDLVDAGQAAL |
10 | 4af1A | 0.16 | 0.13 | 0.82 | 1.56 | HHsearch | | GLYGLIVLDRRESNVGWLKGKRVQPVKSASLVP------------GKQ----RKGGQ----SAQRFA------RLRLEAIDNFYQEVAGMADDLFVPHEIDGILVGGPSPTKDEFLDYLHHEDKVLG-KFDVSYTDSGLSDLVDAGQAAL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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