Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | YHRRVTYLCYQVQKANGNLLTKGCLRTKKGYHAESRFIKRICSLGLDQAQSYQVTCFLTWSPCPRCAQELVLFKSSHPHLYLRIFTARLYFHWRKSYQEGLQRLCRAQVPVAVMGYPEFAHCWYNFVD |
1 | 3vm8A | 0.37 | 0.37 | 0.98 | 1.33 | DEthreader | | NDRNETWLCFTVEGISVVSWKTGVFRNQETCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLY-YFQYCYQEGLRSLSQEGVAVEIMD-YEDFKYCWEFVY |
2 | 2m65A | 0.35 | 0.32 | 0.91 | 1.17 | DEthreader | | ---RHKTYLCYEVERVKDQHRGFLHNQAYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCSGCAGEVRAFLQENTHVRLRIFAARIY-DYDPLYKEALQMLRDAGAQVSIM----TYDEFKH--- |
3 | 5w3vA | 0.61 | 0.61 | 1.00 | 6.85 | HHpred | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
4 | 1ysdB | 0.15 | 0.13 | 0.89 | 0.87 | DisCoVER | | -EGGVPIGGCLINNKDGSVLGRGHNMRFATLHGEISTLENC--GRLEGKVYKDTTLYTTLSPCDMCTGAIIM-----YGIPRCVVGENVN-----FKSKGEKYLQTRGHEVVVVDDECKKLMKQFWD- |
5 | 5w3vA | 0.61 | 0.60 | 0.98 | 0.73 | MRFsearch | | --PRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
6 | 5k81A | 0.35 | 0.34 | 0.96 | 1.08 | MAPalign | | ---DTVWLCCEVKTKDPSGLDAKIFQGKAKYHPEMRFLRWFHKWRQLHDQEYKVTWYVSWSPCTRCANSVATFLAKDPKVTLTIFVARLYYFWKPDYQQALRILAEAGATMKIMNYNEFQDCWNKF-- |
7 | 5k81A | 0.35 | 0.35 | 1.00 | 0.90 | CEthreader | | SGLDTVWLCCEVKTKDPSGLDAKIFQGKVYYHPEMRFLRWFHKWRQHHDQEYKVTWYVSWSPCTRCANSVATFLAKDPKVTLTIFVARLYYFWKPDYQQALRILAEAGATMKIMNYNEFQDCWNKFVD |
8 | 3vm8A | 0.40 | 0.40 | 1.00 | 2.02 | FFAS-3D | | NDRNETWLCFTVEGIKRRSWKTGVFRSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVY |
9 | 3vm8A | 0.33 | 0.31 | 0.94 | 1.17 | DEthreader | | NDRNETWLCFTVEGIVVSWKTGVFRNQSETCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTA-R-LYYFQYYQEGLRSLSQEGVAVEIMDDFKCW--FV---- |
10 | 5w3vA | 0.56 | 0.55 | 0.98 | 1.33 | DEthreader | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLY-YHWHNYQEGLLLLCGSQVPVEVMG-LPEFTDCWEFVD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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