Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | HLFHKPPAVVGEYPARGELYYVKGSNGSGKSTVPSWMAENDPQAYVVTHNGKVMLTVCPSFNIICVGKYDKSKSKGVDSLKDTEQMLFAVSITEQPEYIGYDVIFEGIIPATLLNTWIERLNRPSRRLVVLFLDTPKEVCLARVSSRNGGEDFKHDLVLEKWKRVNSHRERHKELFPNIPAGMMKSNGLTVDQAVS |
1 | 4ntzA | 0.12 | 0.10 | 0.85 | 1.17 | DEthreader | | --------------S--MNLLIMGLPGAGKGTQAAKIVE-Q--FHVA-----HIS-GDMFRAMAGVLAKSYIDGEL-VPDEVTNGIVKERLSQD-DIKE-TGFLLDGYRTIEQAHALDKTLAEGIELEGIINIEVNPDSLLERLSGRIIQREDKPETVKRRLDVNIAQGEPIIAHYAKGLVHDIEGN-QDINDVFS |
2 | 7d7nA | 0.14 | 0.12 | 0.83 | 2.71 | HHpred | | -HFSYRETLQDFTVMPGQTLALVGPSGAGKSTILRLLFRFYISSGCIRIDGQDISQVTSHIGVVPQDTVLFNNRYGRV-TAGNDEVEAAAQAAGIHDAEGYRTQVEGKLSGGEKQRVRTILKAP----GIILLDEATSAL----------DTSNERAIQASLAKVCANRT-----------TIVVAHRLS------ |
3 | 1i2dA2 | 0.13 | 0.10 | 0.79 | 0.65 | DisCoVER | | ------------RATQGFTIFLTGYMNSGKDAIARALQVTLGRSVSLLLGDTVRH----ELSLGFTREDRH----------TNIQRI-AFVAT-ELTRAGAAVIAAPIAPYESRKFARDAVSQA-GSFFLVHVATPLEHCEQSDKRGIYAAAREIKGF--TGVPY--ET--P----EKA-DLVVDFSKQSVRSIV- |
4 | 5uivA | 0.18 | 0.15 | 0.85 | 0.38 | MRFsearch | | --------------ARGQLILIEGLDRSGKSTQASILSTKLSPSKLIKFP----------DRSTPIGKLINEYLTSFTLSDQAAHLLFSANQIQDLLNQGYFIILDRYIYSGIAYTLLSPDKGLPKPDLTLFLTLDLEEISKRKGWG-----DERYELQQFQAKVKQCFLEILDTNKDPTIRIVDVGGKTIDQVTT |
5 | 4gp6A | 0.14 | 0.12 | 0.84 | 1.05 | SPARKS-K | | --------SMKLTIPELSLVVLIGSSGSGKSTFAKKHF--------------------KPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKQLGKLTVVDATNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ-VEEYVIRKHTQQLKKSIKGLQREG--FRYVYILNSPEEVEEVVF |
6 | 1qf9A | 0.17 | 0.15 | 0.89 | 0.66 | MAPalign | | -------------KSKPNVVFVLGGPGSGKGTQCANIVRD-FGWVHLSAG-DLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID----ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTFVLFFDCPEEVMTQRLLKRSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKDKVKIIPAN-RDVNEVY- |
7 | 1gvnB | 0.13 | 0.12 | 0.97 | 0.52 | CEthreader | | NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP------NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLE |
8 | 1ukzA | 0.14 | 0.13 | 0.93 | 1.04 | MUSTER | | ---------PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRK--MDQAISFERDIVESKFILFFDCPEDIMLERLLERSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK |
9 | 3a4lB | 0.13 | 0.10 | 0.81 | 0.88 | HHsearch | | -------------MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNVIVLGSDLIRESFPV--------WKEK------YEEFIKKSTRLIDSA---LK-NYWVIVDDNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE--KIPNE----VIKKMYEKFDEPGKKYKE-PFLIIDTTKDDFNEIAK |
10 | 1zp6A | 0.19 | 0.15 | 0.81 | 1.31 | FFAS-3D | | ---------------GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-----------GRIDPWLPQSHQQNRIQIAADVAGRYAKEGYFVILDGVVRP----DWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEH--------HVLPVSGKDTDQALQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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