>PF18733 (223 residues) TNIDEPPYLFGFYNQLKQEYVSARYLLWEGITESEKYNKHFSDNDVYLLNTLDSTAYGLA IEQIKIAFRSTYSLFDKIAYFVNDYWGLKIPEAKKINFQSVWVDTHKGVKQLRSEFMKYP NLSLRGLYWISKDFIEQDNSNELVLGKTMEPEADKLRTIRNHLEHKYLKVHDNMWGYTDE KWGSFFSDQLAYHISHEELSQKTIRLIKMARAALMYLSMAVHQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | TNIDEPPYLFGFYNQLKQEYVSARYLLWEGITESEKYNKHFSDNDVYLLNTLDSTAYGLAIEQIKIAFRSTYSLFDKIAYFVNDYWGLKIPEAKKINFQSVWVDTHKGVKQLRSEFMKYPNLSLRGLYWISKDFIEQDNSNELVLGKTMEPEADKLRTIRNHLEHKYLKVHDNMWGYTDEKWGSFFSDQLAYHISHEELSQKTIRLIKMARAALMYLSMAVHQ | |||||||||||||||||||
1 | 1ufbA | 0.09 | 0.05 | 0.57 | 0.90 | DisCoVER | --MN--RARD-WLEQARHNLRHAQGSLGLGD--------------------------------YAWACFAAQQAAEAALKGLHLARGQVA---WGHSILDLL-------ADL---P--EDVDVPEDLVEAA-------------------------K-VLDKYYI-PT-R-----------YPDAHPAGPAARH-Y--TRLEAEEALDLAQKILAFVEEK--- | |||||||||||||
2 | 4av3A | 0.05 | 0.04 | 0.77 | 0.83 | DEthreader | LFGQFMTVSGYALGCSIIAMFDRVGGGVYTKADMAA--------------------NVGDNVGDVAGLGADLLESFVGAIVSSIIAISYIFFALVGLATV-LTAFLTYFYLKLGLDVLGF----FSAIIGIFSG----------IL--IGFWAEYML-FVATSVSVDSYPADNAGGIS--------------LDAGNTTAAIGKGFAIGSAIFAALSLFASYF | |||||||||||||
3 | 1ufbA | 0.10 | 0.06 | 0.57 | 0.97 | CEthreader | -----MNRARDWLEQARHNLRHAQGSLGLGD--------------------------------YAWACFAAQQAAEAALKGLHLARGQVA---WGHSILDLLADLPEDVD----------------------------------VPEDLVEAAKVLDKYYIPTRYP--------------------DAHPAGPAARHYTRLEAEEALDLAQKILAFVEEKL-- | |||||||||||||
4 | 1w27A3 | 0.06 | 0.04 | 0.78 | 0.75 | EigenThreader | DPLQKPKQDRTSPQWLGPQIEVIRSSTKMIEREI--NSVNDNPSRNKAI-HGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPS----NLSGGRNPSLDYGF------KGAEIAMAS----------------------YCSELQFLA-------NPVTNHVQSAEQHNQDVNSL--------GLISSRKTSEAVEILKLMSTTFLVGLCQ | |||||||||||||
5 | 6kcrA | 0.11 | 0.07 | 0.64 | 0.38 | HHpred | ---------------------------------------------------------RLNAKTVRSFLITAVELLTAVNLLVLQVFRKDDYAV-KYAVEPLLDGDG----PLGD-L-SVRLKLIYGLGVINRQEYE---------------DAELLMALREELNHDGNEYAFTDDEILGGEVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELI- | |||||||||||||
6 | 1h99A | 0.09 | 0.07 | 0.72 | 0.50 | MRFsearch | --IECMEVSEEIISYAKLQLGLTDHINFAIQRNQ----------------------KNALLWETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAG--------------FIALHIVNAITKVMEEILSIVKYHFKIEFNEESLHY---YRFVTDLKFFAQRLFN-GTHME--------------------DDFLLDTVKEKYHRAYECTKKIQTYIEREYE- | |||||||||||||
7 | 3icqT1 | 0.10 | 0.08 | 0.74 | 0.59 | FFAS-3D | -------QATDFIGSLRSSWKICHEIF--SEKTKYKPSTRL-ICLQTLSEKVREWNNESNLLELQMIRDSVWSYINAVQHLLTLLFLQLYPSN--------WND---FFASLQGVIAASSQSYLKVLLSIGDEIADSLVLKTDV-------QIQKDNLVKDAIRAN----------------------------DMSDIVSFVYEMMLTVGLCLQVYAQWVS- | |||||||||||||
8 | 6djyA | 0.13 | 0.11 | 0.87 | 0.67 | SPARKS-K | TPLSMPVPLN--------EVATSKFFS----NVNDFDRDNQHFPDTTITQAYDTSLPDAEVAALKWFWKFFINLMDNVMYWACQFLSLPLERDVEIVFSGF----KGSHICMFSNLRQMN---LSPILCPYYDLITNFKT-----TTEIRAYVDAHEELKSLLTYTIVGLCDTFTETRNMDTGEYVQNVEKFCYTI----QNAKYMIQLVHVLLFPLTDNK-- | |||||||||||||
9 | 2ongA | 0.12 | 0.10 | 0.83 | 0.72 | CNFpred | --------AILDLNIVQAQFQEELKESFRWWRNTGVEKLPFARDRLVECYFWNTGIIEPQHASARIMMGKVNALITVIDDIYDVYGTLEELEQF-TDLIRRWDINS---DQLPDYMQLCFLALNNFVDDTSYDVMKEK-----------VNVIPYLRQSWVDLADKYMVEARWFYG---------------HKPSLEEYLENSWQSISGPCMLTHIFFRVTDS | |||||||||||||
10 | 4a01A | 0.07 | 0.06 | 0.83 | 0.83 | DEthreader | ATCKDGGLFEAITGYGLGGSSMALFGRVGGGIYTKAA------------------GDNVGIAGMGSDLFGSYAESSCAALVVASISGELALYLIVSVGTVA-VSFV---LPTSFTI--FNFGVQK--LLCVAVGLWA------GLIIFAIISALGMLSTIATGL-AIDAYGPISDNAGIRRTDALD-----GNTTAAIGKGFAIGSAALVSLALFGAFVSRAS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |