>PF18168 (342 residues) PEDIMLARQERKSTAFSFLRFKAGESFYKGHWESLPEIQQHLNNTLSAHAPVPGSSTSTT PYVRGTPIPGLTLFNNDLGLHSPLVQCSYPLILAQRMLLFPDHMRQFHSICGREGVPCDF FADIDLPGESAAGAEKVLMEVLDYLEVRLPGVGFTDPFFLVVTNAVPGSDKMSYHVHARS MTYQQERMQRAEQGIEPESSSSRRKSTLKIKKCRKGSRAGTREEEDAAEMESDVDDYDDL SDMVNVVDSDSAADKKRCGGSTKLIAFQDFRTVKLIGDEVNQTLGREVIDINCYRPNGML RCAFSSKLPSMQDHDFYAQQQDRHGAAAAAARKRLVPLVTAR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PEDIMLARQERKSTAFSFLRFKAGESFYKGHWESLPEIQQHLNNTLSAHAPVPGSSTSTTPYVRGTPIPGLTLFNNDLGLHSPLVQCSYPLILAQRMLLFPDHMRQFHSICGREGVPCDFFADIDLPGESAAGAEKVLMEVLDYLEVRLPGVGFTDPFFLVVTNAVPGSDKMSYHVHARSMTYQQERMQRAEQGIEPESSSSRRKSTLKIKKCRKGSRAGTREEEDAAEMESDVDDYDDLSDMVNVVDSDSAADKKRCGGSTKLIAFQDFRTVKLIGDEVNQTLGREVIDINCYRPNGMLRCAFSSKLPSMQDHDFYAQQQDRHGAAAAAARKRLVPLVTAR | |||||||||||||||||||
1 | 2pffB | 0.06 | 0.05 | 0.85 | 0.67 | DisCoVER | -GGGGGGGG---GGGGGGGGG-GGGGGGGGGG-GGG-GG--GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGGGGGGGGG--GG--G----GGGGGGGGGGGGGGGGGGGGGGGG--GG-GGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GG--G---------------GGGGGGG-GGGGGGGGGGGGGGGGGGGGGG-----GGGGGGGGGGGGGGGGGG- | |||||||||||||
2 | 2vpsA | 0.03 | 0.02 | 0.66 | 0.67 | DEthreader | ---------------------------SFNKHIPFGNYFSGERNIEDNIFFGFKYQCVEDVNFEPPKPNHEF------------HLRCVYGTQLHAIFMETAQIESDEKLRLFAIP-----------------------------------WKYQQYSGRFDFAFNNETGEVKCFEYNADSASTLEEQYTALY-MQAAEAVGLE-GKLCILFD-FRFGHVVDSDGVR--KKVRLCLLLWILYFEP--------------------IPSNKAILPMIYHNHPEHP-ILKAEYEYAKKPIVNMIYQQ-LFEL----K--K-----QD--DY--YAIIGIRTGVD | |||||||||||||
3 | 1vt4I3 | 0.06 | 0.06 | 1.00 | 0.49 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 5lq3A2 | 0.07 | 0.06 | 0.82 | 0.57 | EigenThreader | DNMIYMDSTSSSSGTMSLTVYFDDPDQATIDVNNRISDAVKKLGYSSDGSMSAVDVYNYITLNVLDELKRAIGNRNYSQQYSSQG-----RLNGLHTAELVQAKMQELSKNFPKGPYDQGSIINLPSASALHRTISEVDHISQEVLK------TNGVMAMIGFDLFTSSLKENAAAMFIGLQ-------------------------------DWKDRNVSADQIIAELNKKFAFD-----------RNASSVFIGLPPIPGLMYVQNKYDEIQKDVNKLVAAANQRKTTLDTTFPSGPDDVKRFNLPGYTSGQAIEAIAQVWSGSAYQEVSSKG------- | |||||||||||||
5 | 5l2xA | 0.14 | 0.09 | 0.65 | 1.00 | HHpred | ------LKQIEERA---------SPEEPPSIWRLFHRQAQAFNFVKSCKEDV----HV---FALECVGDGQRIYL----------VTTYA-EFWFYYKSRKNL-LHCYEVI-PENAVCKLYFDLEFNKPANADGKKMVALLIEYVCKALYGVNCSAEDVLNLDS--STDEKFSRHLIFQDVAFKDNIHVGNF----LRKI------LQPALDLL-----------------------PDLSFL-VVKN-N----------MGE---------------------KHLFVDLGVYTRNRNFRLYKSSKIGKR--VA--LEVTEDNKFFP-------------- | |||||||||||||
6 | 5l2xA | 0.16 | 0.07 | 0.45 | 0.65 | MRFsearch | --VHVFALECKVGDGQRIYLVTTYAEFWFYYKSR-------------------------------------------------------------------KNLLHCYEVI-PENAVCKLYFDLEFNANPGADGKKMVALLIEYVCKALQELNCSAEDVLNLDSS--TDEKFSRHLIFQL----------------------------------------------------------------------------------HDVAFKDNIHVGNFLRKILQPALHLFVDLGVYTRNRNFRLYKSSKI---------------------------------- | |||||||||||||
7 | 5l2xA | 0.17 | 0.11 | 0.63 | 0.57 | FFAS-3D | -----------------------------------RKWEAKLKQIEERASPEEPPSIWRLFHRQAQAFNFVKSCKEDVHCKVGDGQRIYLVTTYAEFWFYRKNLLHCYEVI-PENAVCKLYFDLEFPANPGADGKKMVALLIEYVCKALQGVNCSAEDVLNLDSS--TDEKFSRHLIFQLHD----------------------------------------------------------------------------------VAFKDNIHVGNFLRKILQPALDLFVDLGVYTRNRNFRLYKSSKIGKTEDNKFFPIQSKDVSDEYQYFLSSLV------ | |||||||||||||
8 | 5yz0A | 0.06 | 0.06 | 0.93 | 0.59 | SPARKS-K | SMEIIEEIQCQTQQE------NLSSNSDGISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSISALKQKAESLQISLEYSGLKNPVIEMLEGIAVVLQLTATVHCSHQNMNCRTFKDCQHKSKKKLDFYTKVLKSCRSLLESVQKLDLEATIDKVVKIYDALIYMQVNSSFEDHIWIYSHSDDGCLKLTTFAANLLTLSCRISDSYSPQAQSRCVFLLTLFPRRIFLEWRTAVYNWALQSSHEVIRASCVSGFFILLQQ----------QNSCNRVPKILIDKVKDIVKKEFASILGQLVCT-------LHGMFYLTSSLTEPFSEHGHVDLFCRNLKATS | |||||||||||||
9 | 5l2xA | 0.19 | 0.08 | 0.42 | 0.96 | CNFpred | ---------------------------------------------------------------------------------------IYLVTTYAEFWFYYKNLLHCYEVI-PENAVCKLYFDLEFNKNPGADGKKMVALLIEYVCKALQGVNCSAEDVLNLDSST---EKFSRHLIFQL----------------------------------------------------------------------------------HDVAFKDNIHVGNFLRKILQPA-HLFVDLGVYTRNRNFRLYKSSKIG------------------------KRVALEVTE | |||||||||||||
10 | 6pzkA | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | -----------------------------------------GSYIFNGPYLK--NDYTNLISRQNP-HM-LKLITQSLISKYEI-LE---QLLMYKSMTSEQIATTNLLKKI-IRRA-FTNNTQSNEVKNHGFTNQCYNQFLTWKDISLS--RLNVC-----------------------LITWISNCLNTLNKSCGFNNVILTQLFLYGDCILKLFQVSDNIGRWILSFLKLIGLELYFASIKKTQELEYRGESLLCSLIFNVLNALQLKHNKLY-D---------VLKHLKTLDNIDTALTYMNLILSDLKDKL--QDLDRLNKFLTCI----A------ | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |