Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MLWFQRRRRKIVHESPQDELGPQEFHDAQNESWIKSHFSRLSEEKLETGSTPTAASSMAAPQPESGSGEASTTVRVETFTTRQGEAGTALHRESFTSKQKMSGSSVVKETHKESGKSSSTNEATWAAVAACAKEIDTKGRQLANSMLQRATVYQNNGHLESNDINQEELRALEEVEIKLKGNFFTQRETTVAGMNHTHTLHGHGHGHHGYLSHQNHQSHSLTNRSQ |
1 | 2ze9A | 0.07 | 0.06 | 0.92 | 0.68 | DisCoVER | | RDTSPGLE-GS-------------VWQRTDGNRLDAPDQTTVDISSLAPFVRILVGAAPVVPSYRTLNVASMTWNASKLLVV--DGKTAITGGINGWDMALARSAGKYLDWDWTCVWLATSNCMPSMEQDEAAEPTGDVPVIAVG-GLGVIKESDPSSGYHPDLCTVGLHDNTNADRDYDT-VNPEENALRSLHHKLVSVAFYIGSKNLYPALQDFGYIVESPAA- |
2 | 4mhxA | 0.04 | 0.03 | 0.73 | 0.67 | DEthreader | | RNAL----LARSLLFRNA--------GLPQHQNGVRSLPLVRTGIFFAYLLVRKFLQTQDD----------FFLYVAFHDPHLQYTTVG-----------R-MDQGVGLVLQ-L-RDAGVLNDTLVI--FT--SDNRTNLTA-VSLLDLTPTIL---DWFSIPYPSY-AI--------------GR--LLPAEPLWATVFGSVRLVLYDRFLMLDQLAWQTHDPLE |
3 | 4a1sA | 0.07 | 0.07 | 1.00 | 0.48 | CEthreader | | AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERLALAVELGEREVEAQSCYSLGNTYTLFNTAIEYHNRHLAIAQE |
4 | 3sf4A | 0.08 | 0.08 | 0.99 | 0.67 | EigenThreader | | SCLELALEGERLCKSGDVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISARALYNLGNVYHAKGKSFAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFTASEYYKKTLLLARQLEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE |
5 | 7kdtA | 0.22 | 0.13 | 0.59 | 0.70 | HHpred | | MLLADKVLKLLGKEKAKEKYKNREPLM-PSPQFIKSYFSSFTDDIISQP------------------------------------------------------YLKAK---------QYMEEENYDIISECSKEIDAEGKYMAEALLLRATFYLLIGNANAAKPDLDKVISLKEANVKLRANALIKRGSMYMQQQQPL---------------------------- |
6 | 7kdtA | 0.21 | 0.12 | 0.59 | 0.92 | MRFsearch | | ---ADKVLKLLGKEKAKEKYKNRE-PLMPSPQFIKSYFSSFTDDII-------------------------------------------------------SQPYLKAKQYMEEE-------NYDKIISECSKEIDAEGKYMAEALLLRATFYLLIGNANAAKPDLDKVISLKEANVKLRANALIKRGSMYMQQQQPLLS-------------------------- |
7 | 7kdtA4 | 0.19 | 0.08 | 0.43 | 0.51 | FFAS-3D | | ----------------------------------------------------------------------QSMLLADKVLKLLGKEKA---KEKYKNREPLMPSPQFIKSYFSSFTDDIEEENYDKIISECSKEIDAEGKYMAEALLLRATFYLLIGNAN---------AAKPDLDKVIS---------------------------------------------- |
8 | 6w2vA | 0.13 | 0.10 | 0.78 | 0.65 | SPARKS-K | | KEEVIEIVKELAELQSTDPNLVAEVVRATDTELIREIIKVLLELKLRD--------------------------------------------PQAVLEALQAVAELARELAEKTGDPIAKESAAAEAVKKAADLLKRHPKAAAEAVLIACLLALDYP---KSDIAKKCIKAASEAAEEASKAAEEAQRSQKARDEIKEASQKAEEVKERCERAQEHPNAGWLEH-- |
9 | 1hz4A | 0.12 | 0.04 | 0.36 | 0.51 | CNFpred | | ---------------------------------------------------------------------------------------------------------NIARAQILLG----EFEPAEIVLEELNENARSLMSDLNRNLLLLNQLYWQAGRKSD---AQRVLLDALKLATGFISHFVIEGEAMAQQ--------------------------------- |
10 | 3vuoA | 0.07 | 0.06 | 0.84 | 0.83 | DEthreader | | ---SQDRENFIGLFQPEL-KC--YRLRTLNKQFSQLNDLEFINTNYQDWNLNLNYFSKNSIIPDSLKHYRKPEKVVNLVNAN------NISLMKSNITTEEV-----LPVNYLQALNILISK-KDN-LS--E-PNIEIYFKIYFNFLDQWWTYYSQYFELSCVFVEDIYPKFISYMEYIDFKFLN-IQAIKNFFN-EQVMKEMLSP-QL----DISGK-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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