>PF17707 (223 residues) MRPLGKGLLPAEELIRSNLGVGRSLRDCLSQSRKLAEELGSKRLKPAKFGTEGKERVEQR TERQRTGSSKEPRMQIICRRRRREPPPRLLWGCLTPWAQPLRHVTAYENTGHWERLASVV SSKTQQPTVISHSSISITFSHYPPATLDSFLVLEPIKLFPVSSLRSPLCLNCGSCRESIR ISGELIGNAHSPAPPRTPELETLGWDKQAVLSGAQVILVCAEV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | MRPLGKGLLPAEELIRSNLGVGRSLRDCLSQSRKLAEELGSKRLKPAKFGTEGKERVEQRTERQRTGSSKEPRMQIICRRRRREPPPRLLWGCLTPWAQPLRHVTAYENTGHWERLASVVSSKTQQPTVISHSSISITFSHYPPATLDSFLVLEPIKLFPVSSLRSPLCLNCGSCRESIRISGELIGNAHSPAPPRTPELETLGWDKQAVLSGAQVILVCAEV | |||||||||||||||||||
1 | 3kcr5 | 0.07 | 0.04 | 0.68 | 0.58 | DisCoVER | MRVIREKVDAT--K-------------QYDIN-----------EAIALL-------KE-LA--TAK----VESVDVAVNLGIDADQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAELVGFDVVIASPDAKVAVKNAKVRYRNGIIHTTIGKVDLLLLVALK-------------------KAKPTQ---------KGVYIKKV-SIS-TTMGAGVAVG- | |||||||||||||
2 | 4m0mA | 0.05 | 0.03 | 0.69 | 0.67 | DEthreader | KVKTV--T-L-SF--LGTGQVHHILTSFHNT---V---VATVNLCANLYQDDPHSYT-----------YRPGFDPQHSYVIDPEKT-KV--VVKPYYTGNTNALLNDRSELSPEKRFELLCG-KENE------------GYAKERS-----I-LSKRED--------YVQD--SRLFVNQESSFGQPPVRDLSYLQHSLTSIANYHYK--------------- | |||||||||||||
3 | 6w09E | 0.08 | 0.07 | 0.92 | 0.61 | CEthreader | -------------NFNVYKAIRPYLAHCPDCGEGHSCHSPVALERIRNEATDGTLKIQVSLQIGIKTDDSHDWTKLRYM-----DNHMPADAERARLFVRTSAPCTITGTMGHFILARCPKGETLTVGFTDSGKISHSCTHPFHHDPPVIATAEEIEVHMPPDTPDRTLMSQQSGNVKITVNSQTVRYKCNCGDSNEGLTTTDKVINNCKVDQCHAAVTNHKK | |||||||||||||
4 | 1tt9A | 0.09 | 0.08 | 0.88 | 0.58 | EigenThreader | PNNNQEVIDAISQAISQTPGCGQPECVVEGALSLCAKAFGQPVYLYGEAAQPSRQTLPEKLFGPSSFVPSWGATVTGARKFL----------------IAFNINLLSTKEQAHRIALNLREKKVQGIGWYLLAQVSTNLLDFEVTALHTVL---IPPFHAASAQLTSLVDGLRQAVAVPLKLAETVSQLQCGNLSCLSDLQVAAKALETGVFGAY-------F | |||||||||||||
5 | 2d7uA1 | 0.17 | 0.09 | 0.56 | 0.28 | HHpred | --------------------------------------------VGGQWGDEGKGSIVAYLSLH-------DEPEIIARGG------------------------VGTNAGH---------------SVVI-NGKKYAVRQIPTGFMQAGVLVDPEVFFHLEQLKD-----FNV-KDRVGIDYRCCGPANADRVMEPYLTDVAQEINDALDEGSLVLVEGTQ- | |||||||||||||
6 | 2fr0A | 0.14 | 0.09 | 0.64 | 0.78 | MRFsearch | ----------------------PLALASLADTLSLVQAMVSAELG--------------------------CPLWTVTESAVANAAHGALWGVGRVIALEAVWGGLVDVAELARHLAAVVSGGAGEDQLALRAVYGRRWVRAAAKPTGTVLVTPHLLLVSRSG---------------------------------PDADGAGELVAELEALGARTTVAACDV | |||||||||||||
7 | 1y1yS | 0.11 | 0.08 | 0.68 | 0.37 | FFAS-3D | ----------LKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIA----NGDITPEFL-ATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKVSYYQLQTRSAD-----EPLTTF----------CTCEACGNRWKFS----------------------------------------- | |||||||||||||
8 | 3ee1A2 | 0.16 | 0.13 | 0.85 | 0.53 | SPARKS-K | TAPV-SGNFPAPEVIETAINCCTSIHDIYRDIRDLINELGINEFIDSKSYNQLNKIINSNFPQQDLCFQTEKLLFTSLFQ-----DPAFISALTSAFWQS-LHITS----SSVEHIYAQISENFPE----NNCGHIIKINAVVPGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAI------PPESRQ-----------VSFAIISPD- | |||||||||||||
9 | 1ngwB | 0.12 | 0.07 | 0.55 | 0.69 | CNFpred | -------------------------------------------------------------------------VKLSCKASGYTFSYWMHWVKQRPGRGLEWIGMIDPNS--------------GGTKYNEKSKATLTVDK-----PSNTAYMQLSSLTSE-DSAVYYCTRRDYWGAGTTVTVSS-------ASTKGPSVFPLAPSS-KSTSGGTAALGCLVK | |||||||||||||
10 | 2f6dA | 0.06 | 0.04 | 0.74 | 0.67 | DEthreader | QWTRDSAITL-NDGFDLWEE--NQG-RH-FFTSLVQQKALAYAVDIAKSF-DDGDFANTLSSTSTLESYLS-GFIEDSA--------------L--HDIGESDVDVLQSYLLLEDNKDSVNSAY--SAG------------------FLAAYAA---------P-YKLAYDKSASNDITINFFNKYIV----DLSTSYSVTIKSEFNTVADNLVFGFLILELT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |