>PF17661 (255 residues) LKSLRQRESETRWDKESDEDESRHMQEDESQMSSRVKFRDSVKKLKQKSHVQTDFPSAEE EYNFFTFNFDPEPDNIKDKTKSKKKSESNQEEEEGEEQESIVSHQQEQTEDEMDEEDCLV NDREDLFIIDQMAHDFLVVKPADYKSYSERLQKEREILFTPSILTVPMSQKVPENMQPRY LEDEGLYTGERPIVSLSNQNILENRILTQEQGKRWFGDDGKLLALPSPIKQSSTRPPIFS LEEGIEPELETLYKK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LKSLRQRESETRWDKESDEDESRHMQEDESQMSSRVKFRDSVKKLKQKSHVQTDFPSAEEEYNFFTFNFDPEPDNIKDKTKSKKKSESNQEEEEGEEQESIVSHQQEQTEDEMDEEDCLVNDREDLFIIDQMAHDFLVVKPADYKSYSERLQKEREILFTPSILTVPMSQKVPENMQPRYLEDEGLYTGERPIVSLSNQNILENRILTQEQGKRWFGDDGKLLALPSPIKQSSTRPPIFSLEEGIEPELETLYKK | |||||||||||||||||||
1 | 6edgA | 0.04 | 0.02 | 0.58 | 0.83 | DisCoVER | GAFLGDGGDVSFSTRGTQN--WTVERLLQAHAQL--YV--FVGYHGTALEAAQSIVFGGVRAIWRGFYIAG--------------------------------------------------------------DPALAYGYAQAN----GA--L--LRVYVPSLPGFYRTVE-IGHPLPLRL-DAITGEREETI---L---G--W---------PLAERTVVIPSIPTDPNVGGDLDPS-----------SIPA- | |||||||||||||
2 | 6rutB1 | 0.07 | 0.05 | 0.63 | 0.67 | DEthreader | ENYPPSWWNGFNRADNTSGFKNSSSP-IALP-FEAYFANIGNM--GG--HA---TKMTNP--L-----SIGVFR---------------------PQTNG-LKDL--PLGTNEYVGDTATVPR---------------------HLNLVAQGQ-GLLRYAPNSLFAA------RFTTG----------NNPQRNQLLLRSLLGWLGGLQDQTIIADQSLTLSPFQLYQ-----------------LKLLTTIKLK | |||||||||||||
3 | 1vt4I | 0.03 | 0.03 | 0.98 | 0.75 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 3v8vA | 0.07 | 0.06 | 0.95 | 0.55 | EigenThreader | INWTEMFNPGALNDTIRNSQYGAMKVKDAIVDAFTRTLAAAIVMRSPMCGSGTLLIEAAMLATDRAPGLGIGELPYGTVLSNPPYGDSEPALIALHSLLGRIMKNQFKNYHVAEMRQEGIEVAVDRYA--------DWVVHKARQRLFDIIAATISVLGIDYLDTGLFLGQMSKGKSYTGSATVHAGLGGARS--RTYLEWAERNLRLNGLTGRADCLAWLREA----NEQPPTFAFDVQRDHLALMKDLKRLLR | |||||||||||||
5 | 6tgbA1 | 0.15 | 0.09 | 0.56 | 0.33 | HHpred | ------TLLQGDFDKYNKTNVCAKTLPNAICVGAGDNEYRSVVYYQWMETVKVAVPIEDMQRIHLRFMFRHRSSLESKDKGEKN-----------------------------FAMSYVKMKEDG-TTLHDGFHDLVVLKGDSK-----KMEDASAYLTLPSYRH--------------HVENGGLSVSSRDVFSISTL-------------------------------------------------------- | |||||||||||||
6 | 4xc6A | 0.11 | 0.06 | 0.55 | 0.38 | MRFsearch | ----------------TVRAYHRRVVAQSKLARERQQLRAAHDMLQGAG------------------------------------HESAALETLASERDVSLGAVERKLLAMWPQMQQAYSGDEYVVIRTGLISKIRKVVLPRFEDEGEILKWLMREN-----------------VPGSFPYTAGVFAFKREGGDAFRTNRRFKLVSEG---------------------------------------------- | |||||||||||||
7 | 5uz9A | 0.13 | 0.11 | 0.90 | 0.37 | FFAS-3D | ---IQERLQGK--LDKLQPDEDDKRQTLLATHRREAWLADAARRVGQ--------------LQLVTHTLKIHPDARGSNLHSLPQAPGQPGLAGSHELGDRLVSDVVGNAAALDVFKFLSLQYQGKNLLNWLTEDSAEALQALSDNAEQAREWRQAFIGITTVKGAPASHSLAKQL--YFPLPGSGYHLLAPLFPTSLVHHVHALLREAR-----FGDAAKAATKPQNISQLPSLPPNWQRQNNAPMRHSSVFEH | |||||||||||||
8 | 5wtjA1 | 0.13 | 0.12 | 0.96 | 0.86 | SPARKS-K | LK-ISDEEVSKALNKDKKNIITKINDNDIKYLPSFSKVLPEILNLYRNNPKNEPFDTIETELNALIYVLEDDLEENESKNKKTLGNIDEIDENIIENYYKNAQISASKGNNKAIKKYQKKVIECYIGYLRKNYEELFDFSDFKNIQEIKKQIKDINDNKTYERITVKTSDKIVINDDFEYIISIFALLN-----SNAVINKIRNRFFATSVNT---SEYQNIIDILDEIQECITENKKEIEKDFDDFKIQTKKEI | |||||||||||||
9 | 4g7hF | 0.15 | 0.08 | 0.55 | 0.53 | CNFpred | -------------------------------VETINKLSRTARQLQQEL---GREPTYEEIAEAMGPGWDAKRVEETLKIAQEPSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSK--------------------LSEREAMVLKLRK-------------GREHTLEEVGA----FFGVTRERIRQIENKALRKL--------------------------------------------- | |||||||||||||
10 | 5f0oA | 0.03 | 0.02 | 0.67 | 0.67 | DEthreader | ------------------------------------------------LERYRADLIDRLIFRLFLAQKELFLIALMVFCFYLAELVGTVFHTYIWLSWLDDISKALPNAAVFIWGVVETIPSACFNYYNDL---KASSFYQLIDIQLLEAMRVFFQKLED-----------------------AIKLLGLAPNAAEYLSEVATA--ILPLDLKSKHFASNVLVLAEITKSIVLIKLSVSESNTDNYP------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |