>PF17625 (362 residues) MDKRANSRKPFLFYNEDYYCERRKRYFYTNKVIFKKLDSYATNINRCKELLTDFFDYCLP KYYRRKNKFTLLFRLLEPVIKQAEASALTTVSNDQCRWLEINQFSNWEQQDNQYAHKWLI KVVGANIGQQILFIIKQVTKKFKTCNLGFYNYYKLFRRCLSILVFKHKEVFVKCLQVILK AAMPIKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHKMLPTEKQI ELSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLINNKKIMEWNANRCFDESNKTLH VYIRQYYANNCRCVKKSFFKYNGWNRQGRFCRTKKFCHLVNLQLNKDGSKKLKLVQRKSD KL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDKRANSRKPFLFYNEDYYCERRKRYFYTNKVIFKKLDSYATNINRCKELLTDFFDYCLPKYYRRKNKFTLLFRLLEPVIKQAEASALTTVSNDQCRWLEINQFSNWEQQDNQYAHKWLIKVVGANIGQQILFIIKQVTKKFKTCNLGFYNYYKLFRRCLSILVFKHKEVFVKCLQVILKAAMPIKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHKMLPTEKQIELSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLINNKKIMEWNANRCFDESNKTLHVYIRQYYANNCRCVKKSFFKYNGWNRQGRFCRTKKFCHLVNLQLNKDGSKKLKLVQRKSDKL | |||||||||||||||||||
1 | 4d1iA1 | 0.05 | 0.04 | 0.78 | 0.64 | DisCoVER | PELLSGKHALYIILGSQTNSMK---MGATLSIPVAWEQIEPVEGQFDFSFVDVLLKEARQRKV----RL-VLL--W--FA--TWKNNAPHYAPAWVPRVVKEDGDTLNS---------LS--PLGTLDKAFVELMKYLAK---RDKD-H--T--VIM-VQ--VQ------NE--V--GTYGAVRDYS-ADEFFHAYQIARYCDEVTGKIKNLPMY--VNVALRNP--P--GQYSSGG-GTDIWKAAAPNIDLIAPDIYFVLELY---TRPDNALFVAEIG---------------N--DQPFALFPTLGKGGIGFSPFGMDDTYTNYPLGAVYDETIEQFAVYRVNPM--MREWAR--SY-- | |||||||||||||
2 | 6rc9A1 | 0.05 | 0.04 | 0.81 | 0.83 | DEthreader | -AINPRLTPWTYRNTS-SS--PGAWALVRNAKGITQTTYDPTRTEAALTTFVKNKVPVEVAQDYRFAVLLVPSVVYYEQLQRGLGTPWRPWLATEQIHDLPKWSSIRVDHLDPKAMTANYPPWRTPPEFALPFEAYFANI-G-LTWFGQALLV-FG--GN--G------HV-KSAHTAP-----------------W-EYVPRM-V-----VLAGTITMGDTATVPLNLVAQGQPDQVNWSNKLPLSAFSPTLSRFS--TGFNLGLNNAQRQLLRGLLGWTDGG--L--DATQRALIWPW-FRGS-WVNRLGRV---SVWDL-------QSLKTAKMNVIVRT-------AELLDGEGQ-TA | |||||||||||||
3 | 1vt4I3 | 0.03 | 0.03 | 1.00 | 0.59 | CEthreader | YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 5frpA | 0.10 | 0.09 | 0.89 | 0.83 | EigenThreader | QFEQLGDQENGYHIQQTYLITKLLEYRS------IVLLADLPSSNNLLIELFHIFYDEATNDDNNSRLLTVVVKLHKLVLRLWETVNELFRKEATKLIGQILSDLNFVSTHSDTFKAWISKIADISPDVRVEWTESQIIATREDISK-------ELNQALAKTFIDSDPRVRRTSVMIFNKV-------PVTEIWKNIIYTSLLHLAREHKEVRELCINTMAKFYSNSLNEIEREIIDTIPSTLYNLYYINDLNINEQVDSVIFEYL----LPFEPDNDKRVHRLLTVLSHFDKKAFTSFFAFNARQIKISFAISKYIDFSKFLNNQESM---------------SSSQGPIVMNKYNQTLQ | |||||||||||||
5 | 6gmhQ | 0.13 | 0.10 | 0.77 | 0.33 | HHpred | ---------------------HDEHYYNAVTTSY-NLARLMCEFHEAEKLYKNILRE-HPNYVDCYLRLGAMARDKGDWFKEALQI----------------------NQDHWSLIGNLHLAKQEWGPGQKKF--ERILKQPSTQSDTY-SMLAVWLQTLHQPREKEKRHQDRALAIY-KQVLRNDAKNLYAANGIGAVLAARDVFARDISDVWLNLAHIYVEQKQYISAVQM------YENCLRKFYKHQNTEVVLYLTLLKARHVAPSDT--VLMFNVALVLQRDEKSNLKEVLNAVKELELAHRYFSYLSKLAL------AATEARQCSDLAQYHVARAR------------------- | |||||||||||||
6 | 1yvlB | 0.12 | 0.09 | 0.72 | 0.63 | MRFsearch | ---------------------------------------------KFLEQVHQLYDDSFPMEIRQYFATIRFHDLLSQLDDQYSRFSL-----ENNFLLQHN---------IRKSKRNLQDNFQEDPIQMSMIIYRKILENAQRF--NMLDKQKELDSKVRNVKDKVLEDLQDEYDFKCKTLQNREHDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQK------HDPITKNKQVLW-----------DRTFSLFQQLIQSSFVVERQPCM-------RPLVLKTGVFTVKLRLLVK----------------- | |||||||||||||
7 | 6xt4A | 0.18 | 0.11 | 0.60 | 0.78 | FFAS-3D | ------------------------------------------EKEKLKELLKRAEELA---KSPDPEDLKEAVRLAEEVVRERPGSNLAKKALEIILRAELAKLPDPKA--LIAAVLAAIKVVGSNLAKKALEIILRAAEELAKLPDPLALAAAVVAATIVVLTQPGSELAKKALEIIERAAEELKKSPDPLAQLLAIAAEALVIALKSK--EMVKLTTLALLTSLLILILILLDLKEMLERLVIVKVLKVIVKAIEASVLNQAIS------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 4gyoA | 0.08 | 0.07 | 0.86 | 0.64 | SPARKS-K | ------------------------------------------PSEEVAVKLNEWYKLIRAFEAEENQDLLLYFSLMEFRHRIMLDKLPVKPFSDMLNEIESNL--TGLLEYYFYYFRGMYEFKQKNF-ILAIDHYKHAEEKLEYVE--DEIEKAEFLFKVAEVYYHQTYFSMNYASQALDIYTKYELYGRRRVQCEFIIAGNLTDHLCSALEHARQLAAAYYNVGHCKYSLGDYEAEGYFKTAAAIFEEH-NFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEW----EDDMYLTKFRLIHELYLGSGDLNVLTFDLLESRQLLADAEDLLHDTAERFNQLEHRRLMNIKKKLAEQ | |||||||||||||
9 | 1gcjA | 0.10 | 0.07 | 0.66 | 0.82 | CNFpred | ---------------------------------------------NLPTFLVELSRVLANPG------SQVARVAAGLQIKNSLTSKDPDIKAQQQRWLAID------ANARREVKNYVLQTLGSSASQCVAGIACAEIPVS-----QWPELIPQLVANVTNSTEHMKESTLEAIGYICQDIDPEQL---KSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFKESERHFIMQVVCEATQCTRVRVAALQNLVKIMSLYYQYMETYMGALFAITIEAMKS-------DIDEVALQGIEFWSNVC------------------------------------------------- | |||||||||||||
10 | 3a6pA | 0.06 | 0.05 | 0.83 | 0.83 | DEthreader | MLLVMILLAEDVVTQLTQNMERIFSFLLNLQENVYSKAQA-CR---GVAALNTLAGYIDWVSMSHITA-CKLLEILCLLLN-E-------Q---ELQLG-------FGDVAMHYILSAAQTADGGGHYVFLKRLCQVLC--A----L-GNQLCAL--PNFGKYLESFLAFTTHPSQFLR----------------S-STQMTWGALFRSLLAIIPKYLRASMTNLVKDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQPSVQWELFLEVITFIPVNDGIE---L-LQMVLNFDILCVLSANVRRHSTQMMSVLLIRTHNTLYAP--DMLERSTENHILGKAAIP-YR-QE--E | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |