>PF17623 (277 residues) MSDGKLLSAFEEELRKAQSLEELKQKYEEAQKQIADGKVLKRLYKVYEKRQTELMLQQYR QIKAELEKRKKVKKKDKADIRVRVVKKWINSRLFSAEHYVALLQENQDGLSILFLRRAKL IENQGYLMLEVKKLRKAWVLTAEPILLERLKFPFGKKFVAVHFVLPNYPYTLQLKPDEKL KELAVKAINGPQIMSAMIRTKFFEALARVGSGPDLMMLIIGVVMGIGIGVAIGFGIANAN LTHLLSQHVTNTTVTHTTTTTTSPSFTIPSNSSKGVS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MSDGKLLSAFEEELRKAQSLEELKQKYEEAQKQIADGKVLKRLYKVYEKRQTELMLQQYRQIKAELEKRKKVKKKDKADIRVRVVKKWINSRLFSAEHYVALLQENQDGLSILFLRRAKLIENQGYLMLEVKKLRKAWVLTAEPILLERLKFPFGKKFVAVHFVLPNYPYTLQLKPDEKLKELAVKAINGPQIMSAMIRTKFFEALARVGSGPDLMMLIIGVVMGIGIGVAIGFGIANANLTHLLSQHVTNTTVTHTTTTTTSPSFTIPSNSSKGVS | |||||||||||||||||||
1 | 2c7yB | 0.06 | 0.04 | 0.75 | 0.62 | DisCoVER | -----------AAYQRTSLYG---------------------------DDVVIVAAH-R--T---P--LCKSKRGNFKDTCSSGLQAVAAAGAGLESMMGVTSEVSRQEQDQAAVDSHKAADEIIPVKTKLVDDEKPITVSVDDGILLGPVFTTTGNSSSDGAGAVGVFTFAAVGPAVAIPAAVDIDLFEI--N--EA--FASQFVYKINVNGGAMAI-GHPLGATGARCVATL---------LHEMCRFGVVSMCIG--TGMGAAAVFERGD---- | |||||||||||||
2 | 6rc9A | 0.06 | 0.05 | 0.76 | 0.67 | DEthreader | --SQQGGLPQFGFWTRRHPEWF-DGGQTVA------F---VTKSAHTAP-RT-TMDAEDLQLFMWAWQVLAWPNATNKNQR------LRGLLGSIPV-LVN-RSGS-DSNKFQ------QKWSYDLKLNLPAYNGLLALETYFGNGFKIPEQND--A-LITPL-TPL----L---D---ASDA-TQRALIWAPRVDQQSDSQGS-TTTATRN-ALP-EHPNAL-----PNQVRTKLRQS-FGTD--QP-LT-TPFSGNWGQPTGNGVG--------- | |||||||||||||
3 | 5ctqA2 | 0.08 | 0.06 | 0.84 | 0.48 | CEthreader | WTVALWSRYLLAMERHGVDHQVISVTFEKALNAFIQATDYVEIWQAYLDYLRRRV----------------DFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNA------------KYANMWLEYYN--LERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKAL------------- | |||||||||||||
4 | 1iznB | 0.06 | 0.04 | 0.74 | 0.62 | EigenThreader | --SDQQLDCALDLMRR-LPPQQIEKNLSDLIDLV--PSLCEDLLSSVDQP-------------------LKIARDKVVGKDYLLCDRKLEVEANNAFDQYRDLYFEGG------VSSVYLWDLDHGFAGVILIKKAGSIHV---VEVQEKSS-GRTAHYKLTSTVG--SDETVSD-----------------------------------SSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDA--IPDNQKYKQLQRELSQVLTQRQ | |||||||||||||
5 | 1vt4I | 0.21 | 0.17 | 0.81 | 0.60 | HHpred | ---KDILSVFEDAFVDVLSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEIKTYIEQRDRLYNDNFAKYNVSRLQPYLKLR----QA-------------LLELRPAKNVLIDGVL-----GSGKTWVAL-DVCLKVQCKMDFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELKSKPYENCLL---------------VLLNVQNAKAWNALSAATTTHHHMTLTDCRPQDLPREVL---- | |||||||||||||
6 | 2r02A | 0.11 | 0.08 | 0.67 | 0.48 | MRFsearch | ----QSILTKSRSVIEQGGIQTVDQLIKELPELLQRREILDESLRLLDEEEATDNDLLYKPLRAEGTNFRTVLDK----------------AVQADGQVKECYQSHRDTIVLLCKPEPEL-----------------------------------------NAAIPSANPAKTMQGSEVVNVLKSLLSNEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHEEVLKNLATAYDNFVELVAN------------------------------ | |||||||||||||
7 | 6vq6G | 0.16 | 0.12 | 0.78 | 0.64 | FFAS-3D | LKVGTLLVGLSDELAKLDAVEGVVKKVAQYMADVLEKNISEIIAKGVTQIDNDLKASAYNNLKGNLQNLERKLDSEYLVTLLVVVPK------LNHNDWIKQYETLAEMV--VPRSSNVLSEDQDSYLCNVTLFKKA--VDDFRHKARENKF-----------IVRDFQYNEEEADKEEMNRLSTDKKKQFGPLVRWLKVNFSEA---------FIAWIHIKALRVFVESVLRYGLSVKKLREVLHE------------------------------ | |||||||||||||
8 | 3opyI | 0.13 | 0.11 | 0.89 | 0.55 | SPARKS-K | -------DSIIRDLERENVGPEFGEFLNTLQTDLNSEKPIEQVKSQLETHFLAHETQEFSRVDKLLTNYYNNYEVNVLEFVLQMSRDLIPLNVWFVLDMISQLSTSKQDLPL-----------DYYLVLNNSQTGKYSAVGAEPIRGNVGA---GDRKITFHLLCTDFEMS-----DRSFVTLLLDYYFDTNMNNKLQQLKILESLYQITVDANFNSYVEG-IPAFRRHEIANFLKKRKNADELIFKYVGRWNICYQKHQGNISIHQISGYLD---- | |||||||||||||
9 | 4k1pA | 0.12 | 0.09 | 0.74 | 0.62 | CNFpred | IRFNSYYSKLYELAGNIQSKADFTNAYGKLQLQVQIQENMEQDLLELNRFKTVLD-KDSNNLSIKADEAIKTLQ-GDIVKLREDIKRIQGEI---QAELTTILNRPQEIIKGSINIGK------QVFTIT------------------------TKTIDFVSIGTL--SNEIVNAADSQTREAALR---IQQKQKELL--PLIQKLSQT----EAEATQITFVEDQVSSFTELIDRQITTLETLLTDWKV--------------------------- | |||||||||||||
10 | 6bcuA | 0.07 | 0.05 | 0.81 | 0.83 | DEthreader | -HLSCVKKERTAAFQALGLLSVAVRSEFKVYL----P-RVLDIIRAALVFIMLAVLYDSRTLGSFETSRTVASLDERDTVGLGHLVSPILASMRWVDELFIIIMDMLQDS-----------QLVASTGYVV---EPYRKYPTLLEVLLNFLEGTEAIVLLLGERLQGKSRWYKAHFSISNLTWQVIPEMQLFGVNSIQRYTRSLAVMS-------DRHPSNLML-ILHIDFGDCFEV-IPFLVLLIKQATSHE------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |