Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MIINIGELARVSDKSRSKAAGKLVEVVSIQLKHGVKDEDSEVKVRIIPKDGKSKPQFGYVRAKFLESAFLKAVPAKGIETIDTSHVGVDFKWKLGQAIKFIAPCEFNFIKDDGRVVYTRAMCGYITDQWVEDGVKLYNVVFLGTYKVIPESWIKHYSNALYA |
1 | 1iz6A | 0.07 | 0.05 | 0.67 | 0.71 | DisCoVER | | -------GDKTKVQVRYIIIEPCRIVNITVSSPGKHGSAKARIEAVGIFDG--KVRSIVKPTS-------------AEVDV--------P-IIDKKTAQVIAIDTVQIMDETYETFEVPIEGINVEYWETL---GRIKIM------------R--IK----- |
2 | 4gvqA | 0.07 | 0.06 | 0.81 | 0.83 | DEthreader | | DCG--------GIMYTQVMGGACQKAGWQIKVD----KYFAMGSRATYRIEYEDDAVIALEANPTASIVVQSGIVEAIFKMNEIGYDPISGAGRCPISILNDLK----------------AMGSTSMGSVFL-VPS--FYFFYIPFAPAQKLNAEVLFQQIV |
3 | 2g3rA | 0.12 | 0.08 | 0.69 | 0.79 | CEthreader | | --SFVGLRVVAK--WSSNGYFYSGKITRDV-------GAGKYKLLFD------DGYECDVLGKDILLCD---------------------PIPLDTEVTALSEDEY-------------FSAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNR |
4 | 4uxeA | 0.06 | 0.06 | 0.86 | 0.73 | EigenThreader | | EFISKSANAFRAD-------YGFFIRND-----------ASNTYFLLTAAGDQLRPLLINNQSTIGEGGGLTVNSRIRSQGTKTSDLGFWSIDINDGYFK-----VEKTNEVGLPYLEREVKSPGTLTQFGNTLLYQDWITYPTWTRTWQKSFVQVFDGGNP |
5 | 2lvmA | 0.12 | 0.08 | 0.69 | 0.28 | HHpred | | MNSFVGLRVVAKWSSNGYF--YSGKITRDVGA-------GKYKLLF------DDGYECDVLGKDILLCD---------------------PIPLDTEVTALSE---------DEY----FSAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGN- |
6 | 4krtA | 0.13 | 0.09 | 0.64 | 0.60 | MRFsearch | | -------IIGSIP------AGETFKIKWVDE--------DYLGWYYVEY----NGVVGYVNADYVEKLQM------------------ATTYNVSTFLNVREE---------SRIVDKINSGDIFRIDWVDSFIGWYRITTKGKVGFVNAEFVKKL------ |
7 | 2eifA | 0.16 | 0.11 | 0.69 | 0.47 | FFAS-3D | | --LKVGQYVMI--------DGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDR-------------RKGQVLAIMGDMVQIMDLQTYETLE--------------LPIEGLEPGGEVEYIEAVGQYKIT-------------- |
8 | 4aq1A | 0.12 | 0.12 | 1.00 | 0.58 | SPARKS-K | | DSGNSATDQFVVVATKDKIVNGKVEVKYFKNASDTTPTTKTITVNVVNVKADATPVGLDIVAPSEIDVNAPNTASTADDFINFESVEIYTLDSNGNRLKKVTPTATTLVGTNDYVEVNGNVLQFVNVDVTADGTKRIPVKYINSASVPASATVATSPVTVKL |
9 | 5t88A | 0.11 | 0.09 | 0.81 | 0.87 | CNFpred | | MFWKDREGERMVFGEGL----TSGYFMSIRKSS-----DGKFAIVTLTY----GWNQGEVYIGPIDNPQ-------EWKKVYSASVPVEAIDVVNGKLYILTKGKIIAIKNGKIDEVIPEGEFPLEWAVIVRDKILAGRLVHASYKLEVYT----------- |
10 | 3k8gA | 0.09 | 0.07 | 0.78 | 0.83 | DEthreader | | --LGVVGYLYFLIIIHIKVTTAVYGA--F-F-----RS-KEFRLFGSGS--APHFSCVIFGS-----RPQLPPRFEKESE----------GTSQTVALYIKNGGHFKLLN---FPQLLLAMELYL-TARR----NEYLYTLSIIEGTISAERLASVISSLYS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|