Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MIYNNIDTDLISLGKAKKFTEEEEKWITPIYYEGESLDFTLKNKYVKINKIEENSYGKKFVTIKSKEYSKIIESISEKLGTVSPISSDGSFRAFINNKTKINEKNLDDVSFNACVSLVFPTIYKDTEKKTLQIYIKDLVVVEIIKDELEIELDKLSLAM |
1 | 1p35A | 0.04 | 0.04 | 0.86 | 0.71 | DisCoVER | | QTIIRDCQRELMFNISGIKNQVLSFEPNKVIVPFAHEGLYEYDVVAYVDSV------QFDG----EQFEEFVQSLI-LPEKVLYYNEKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKK----SKVLYVKLHNVTSALNK---NVI---LN-TI- |
2 | 2q6bA2 | 0.08 | 0.06 | 0.76 | 0.83 | DEthreader | | ---IPVGV-AGPLCEFQVPM-ATTELVANRRIGLG-------------ASSRVLADGRKSVVCEAVI--VLMIVNINKNVGSASIGGGSNCITLMEASGPT------NEDLYISCTMPSIEIGTVCENQLAVCTV--GELSLM------AALGHL---- |
3 | 1o0xA | 0.10 | 0.09 | 0.97 | 0.67 | CEthreader | | DVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVSVDVGAVYQGLYGDAAVGKELVRVTREVLEKAISVGFNVIRDYVGHGVGRELTPGTGVVLRKGMTLAIEPMVSVVVKEDGWTAVTRCAHFEHTILITENGAEILTKE----- |
4 | 4fqeA | 0.04 | 0.03 | 0.67 | 0.68 | EigenThreader | | VSNGTE-VVASYVNSVSNNNY--RPYLRGRANVDLSVALRYRYTLTGNIDYTFL--KDYTIGYEL--EYKKGT-----------SYDITHNVKLSKWDK---------NWKPYVEVGNVSR------------QTRYRVGVQYSFH------------- |
5 | 5gmtA | 0.13 | 0.08 | 0.57 | 0.32 | HHpred | | ------------------------TYGQSL--GRGKFRFM-NNKWHSISE-----------EV--------------HINT--VGKTDGWVKICVQAQQCYTANHLRNTNSHHLRGMFFSTFFGGSAPNDCYSYFKNFQILTPS--------------- |
6 | 2izoB | 0.09 | 0.06 | 0.65 | 0.58 | MRFsearch | | --------------------------TLILSSNESKLTLTFDTRSFELPLIQVESTFPFKAQLLTITFADIIDELSDLG---------EVLNIHSK---------------ENKLYFEVIG-----DLSTAKVELSTGTLLEASDVSSSYGMEYVANTT |
7 | 3d4eA | 0.20 | 0.16 | 0.79 | 0.38 | FFAS-3D | | --FNKIKVQLKQFGDPNKSEQRNAGNITLDSYDGAVINAQLYKNSTVARSISNFSFSRE-AKIGKEDYDELYKKIVEKL---------GEPDVLSQSSSDKEEQ-----------TVWSSGIKTKSSSATIELYFENGLLKNKTQKDLE---------- |
8 | 2nc8A | 0.09 | 0.08 | 0.86 | 0.55 | SPARKS-K | | -----------GRENLYFQGHMLRVRASITISPDDLVSGEIIAAAVAVSNYDSD--GYVGSQAVFAELPQLANMNSDAAGVNLSLRRNGN-IVILEGRADLTSVSDPD--ADVELTVAFPAAVTSIEPEVVQWKLKSTMSAQARYTDPNTRS------- |
9 | 3lx1A | 0.13 | 0.10 | 0.79 | 0.74 | CNFpred | | --------------------------TLILRKGENFLEITFEKRTFRLPLIDVEE-FTAKVVLLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGETNEVEIRLT-EETKSAYGIRYLDMVKGIKADEVILRFGPLQMEYMIRDEGRLTFL------ |
10 | 5yvfA | 0.07 | 0.05 | 0.74 | 0.83 | DEthreader | | FDNLLHKID--TRL-S----------ASS----LSLNQSLYIEYKIETNMVIGFFPKERAFSLRYQ-TAGMLDTTLRGVLKLPSRPSLVCENCLYSKI-----------DR-RARAFHIMDPKG-----VLEMLIVF-LEE-R-G---HPVLDN-LPYM |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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