Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VRGMRSDVLCGDIRFTVQCICNELGYFPTERLSKPCPWPNREKRSAPEDEFAFEDYEDEDYFHPRALSIPSEIENGNEKESDAFSILSRGKREIAFYQECCNIRTEHKCNRTTVSLYCRKY |
1 | 3gbwA | 0.10 | 0.09 | 0.94 | 0.54 | DisCoVER | | ---YSVVNRFESHGWGYSVEAIRFS-ADTDILLGGLGLFGGR-GEYTAKIKLFELGPDGGDGDLLAETDAYDCAAREKYA-FDEPVLLQAWWYVAWARVSSDCGITTKSNNTGQIPQLLY- |
2 | 5y6qC | 0.05 | 0.04 | 0.83 | 0.83 | DEthreader | | --NQR---YTTPRERPATSQQLLIIQCS-KVSAFEVDEPLRYAFWWGVEVVKRMVAALDS-WIGMIGVGLMEEIVVNDYLVPV-----EL-GIVGVAAISNFATGKRVR--GLPI------ |
3 | 2in2A | 0.07 | 0.07 | 0.93 | 0.52 | CEthreader | | ---------GPNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRRGFISEDLEGVDATLVVHSNNFTNTILEVGPVT |
4 | 3m1cA1 | 0.06 | 0.06 | 0.95 | 0.57 | EigenThreader | | VTFAAAPDREGLTFPRGDDGATERHPDGRRNAPPPGPPAGTPRHPTTNLSIAHLHNASARGLLRTPGRYVYLSPSASTWPVGVWTTGGL----AFGCDAALVRARYGK--GFMGLVISMRD |
5 | 3bp1D | 0.16 | 0.13 | 0.83 | 0.33 | HHpred | | -----SACAGETVTVNVK---------SLNEYTA-EPIVT-QGECIDDQDIEIANYEF----DDALLQGAAQGEEVSEVLPDSVEIAYHGAKNREFHEQCVERDI-RYCQPQSLTVYARYT |
6 | 1bqtA | 0.19 | 0.08 | 0.44 | 0.65 | MRFsearch | | -------------VDALQFVCGDRGFYFNKP----TGYGSSSRRAPQ----------------------------------------------TGIVDECCFRS----CDLRRLEMYCAP- |
7 | 2kqpA | 0.26 | 0.18 | 0.70 | 0.33 | FFAS-3D | | ---FVNQHLCGSLVEALYLVCGERGFFYTKP-------TRREAEDLQVGQVELGGGPGAGSLQPLALE------------------GSLQKRGIV--EQCCT----SICSLYQLENYCN-- |
8 | 4lqzA | 0.22 | 0.17 | 0.79 | 0.64 | SPARKS-K | | FQGQRFEIQQGSIYFTAKYFIDKVGYIPDNVLN--C-----------KPDFWLKYKKDK-----VTYYVYLIENLDDEV--FHLSALQDNRIPIDIADDVATGKSPH-QNDRTLKLN---- |
9 | 3bh6B | 0.25 | 0.07 | 0.30 | 0.51 | CNFpred | | ------------------------------------------------------------------------------------SVFFRNCRDCKCTLACQQFRVR-DCRKLEVFLCCATQ |
10 | 3nzpA | 0.10 | 0.08 | 0.81 | 0.83 | DEthreader | | GNENFIVCPAIDIVLLLL----------PLK--VNQFVKNLVKKNNEGHNITLNGGESGRFVAANAVLIAPVLEVEKENYFLG-FFL-V-G-AYQEVLG---AIISINKGYEVEGII---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|