>PF17518 (344 residues) ILNVQRIQNNQVTEYTMSPVRNFANTKDVYFDAQLTNIESKIDSSRAQIHLTIALKYNTN LPDNIFQAHFSLGNWQSDKIQLQKAPDKKHDSLNSIKYFYAFLDVPRSALAKKEINRFSN VVARVLRISFRLQDQSEKGNWSDYHLFDTVASELYATVIKETINFGNMIKINALDGSKQL TSSQGSFKYSWTMYDYRNLEQLDEVRNLINISFDKPVQIVNVDVKIHYVPTKGRLQEIKQ QGEFENNLDVNEKLKLNLIGNWNFDKHNKKLISDISGTGIFLPQGGYGSYEIMIGATVGN DFYTIIANNQFKYETPLDDLEQNDFFEVNYLPVYSTYNFSDLTQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ILNVQRIQNNQVTEYTMSPVRNFANTKDVYFDAQLTNIESKIDSSRAQIHLTIALKYNTNLPDNIFQAHFSLGNWQSDKIQLQKAPDKKHDSLNSIKYFYAFLDVPRSALAKKEINRFSNVVARVLRISFRLQDQSEKGNWSDYHLFDTVASELYATVIKETINFGNMIKINALDGSKQLTSSQGSFKYSWTMYDYRNLEQLDEVRNLINISFDKPVQIVNVDVKIHYVPTKGRLQEIKQQGEFENNLDVNEKLKLNLIGNWNFDKHNKKLISDISGTGIFLPQGGYGSYEIMIGATVGNDFYTIIANNQFKYETPLDDLEQNDFFEVNYLPVYSTYNFSDLTQ | |||||||||||||||||||
1 | 4mbrA | 0.05 | 0.03 | 0.76 | 0.70 | DisCoVER | --------VQGQDVTDKLIKLSGAKAGVINMSMHMSLKFTID----S-VNRGDTFEIKL---SDNIDTNGVEPIKSPTGEVY--ATGIYDSQKKSI-VYSFTDFA----AS---K--NNINGILDIPLWPDDVVLFS-VKIKQE-ATIKET--VK--YDPPVRIFAGGVSVDSRITNI-DDVG----KKMTYISQ-------------I-NVDGKSLYNYNGLYTRIYNYSKESTADLKNSTIKIYKTTSSMEDVTFANSYPEK-----------------G-----WYDIYWGQF-I---ASNETY----VIVVETPFNAVTLNTTLSDYNGVEHNHTYSSE- | |||||||||||||
2 | 2hs3A | 0.04 | 0.02 | 0.64 | 0.67 | DEthreader | ----A-------HCSHHPSAIEP------AATGVGIIRDVLA--MGARPTAIFDLHMSRIIDGIIIGLAAGVNMLVDSKAIVIFGTGDGI-GSFASIQVGELIAFLE-MVEEGLVEGAQRMAVV------EEVNEVFEQ------------YDHMVGTPGFGAAVMIGYS------------------LVTHS--R-DL--GLIAVLEVRKTLSVGAEPLAITNCVNYGDPDVDPLSMTLKN--------------ACEF-------------S------------------PVA---------SGNASLYNT-----K-PIPPTLVVGMLGKVNPKVIRKS-D | |||||||||||||
3 | 1wnhA | 0.07 | 0.04 | 0.62 | 0.51 | CEthreader | -AFTMEIPPTHYAASRAASVAEQGTPHKLFLVQTVQQASKEDIPGRGHKYHLKFSVEEIIQKQVTVNCTAEVLYPQMGQGSAPEVNFTFEGEIGKNP-------------DEEDNTFYQSLMSLKRPLEAQDIPDNFGNVSPQMKPVQHLAWVACGYVMWQNSTEDTWYKMLKIQTVKQVQRNDDFIELDYTI--------------LLHDIASQEIIPWQMQVLWHPQ------YGTKVKHNSRLPK------------------------------------------------------------------------------------------------ | |||||||||||||
4 | 5j67A | 0.06 | 0.05 | 0.81 | 0.73 | EigenThreader | GLLVIPLPVEEQCRGVLSEPYDEAMGYPMVQQWRVRSNRVKLSTITEALYGSIIHFPSQLISGVEIRCEEKGRCPSTCHLCRRPGKEQLSPTP-----------------------------VLLEINRVVPLYTLI--QDNGTKEAFKSALMSSYWCSGKGDVIDDWCRCDLQPVLRLSPTVEVSLEWVD-------------------VQPAIGTKVSDYILQHKKVDTDLYTGEFLSFADDLLSGLGTSCVAAG-----RSHGPEVSIYSV----IFKCLEPDGLYKFTLYAVDTRGRHSELSTVTLRTACPLVDDNKAEEI-------ADKIYNLYNGYT | |||||||||||||
5 | 1r17A2 | 0.14 | 0.05 | 0.36 | 0.27 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVNHLIKVTDQSITEGIKAHDAENLIYDVTFEVDDKVKSGDTMTVNIDKNTVPSDLIPKI-KDNIATGTYDNTNKQITYTF--TDYVDK-YENIKAHLKL--TSYIALSSVNKTITVEYFSTSSGQGQGDL-- | |||||||||||||
6 | 5jvkA | 0.11 | 0.09 | 0.78 | 0.45 | MRFsearch | ---TFSGVANAGKELVIDVT------ELGYYTLELTLADNENIIQTAVVNYAVVPEIIDEERPLDMGVCVHP---------------------TRIRTDLAWEHVVMPEHMYQFVSASEKGIKPLIVFGYANAIGFPTIPFPTTEESRLGCANALAYAVKEMGNRVTEWELWNEPNDITLISGGFQDGYSIHPYMAVNIPTVWPYLKKISEEKELSVWVTEIGGVFWYDFQNGVNKVLAFGQTFYTAWTTAEGTTIRVKAPTDV---DKLRLIDWQGCEMPLTV-DNGYLVLNLSI---LPQYLVVK------------------------------------- | |||||||||||||
7 | 6cd2C | 0.09 | 0.08 | 0.86 | 0.43 | FFAS-3D | IFRSWSYTG--ASLESMLPPRLRGYAPQITGIAETARVVVSQQGRVLYDSMPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVR-YKLVSGRSRGPVFATGEASWGLSNQWSLYGGAVLAGDYNALAAGAGWDLGV----------PGTLSADITQSVARIEGERTFQGKSWRLSYSFSERNYMTMEQYLNARYRLNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGLQGVAVGLSASRSKYLGRDNDSAYL---RISVPLG-TGTASYSGSMSNDRYVNMAGYTDTFN-------------------------------- | |||||||||||||
8 | 5n0bA | 0.09 | 0.07 | 0.84 | 0.62 | SPARKS-K | GKAIHLVNNESSEVIVHKAMDYNDMFNNVSFWLRVPKVSASHTNEYSIISWSVSLKG------NNLIWTLKDSAGEVRQITFRD-------LPDKFNAYLANKWV---------------FITITNSANLYINGVLMSAEITGLG----------------AIREDNNITLKLDRCN----NNNQYVSIDKFRIFCKALNP-KEIEKLYTSYLITFLRPLRYDTEYYLIPVASSSKDVQLKNITDY-------MYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTKSGDFIKLYVSYNNNEHIVGYPKDGNAFVGYNAPGIPLYKKMEAVKLRDLKTYSVQLK | |||||||||||||
9 | 5ny0A | 0.08 | 0.06 | 0.69 | 1.03 | CNFpred | ----------------------------RDVTIYGNGKYINAT----DGNGGIFIHNTK---SYTVNLTIEKATL-------------------YNQSQYGFVHMN-----------EGTDNITYKNITAYGG----------TLVWSQT------HVGTKTLSLEGTVNFYSV---PSYTVGGQTYSTDAFK-TTPAIYVS----NEINIADNANIALENTKIDIWMIAD-PHTTALTIGNNATLTMENNSALNIKLDNSFTVGE-GSTVKLSAKVDNVRILP-YEDSNTANVSFAK-GSDVTLHAGTGSNLRMGA----ISNQIDFNGKATFIK-------- | |||||||||||||
10 | 6etzA | 0.06 | 0.03 | 0.62 | 0.67 | DEthreader | --------------PAYTFPFAVEPHVASYEDQMRHELMINADQLGFYVVLEDLEHGFESAWANPSLRMRTVERDKNHAVVMWHYSRMYAS------LCE------------------------------------------------GEEVHDGNFVTDGVRPGLFKKV--------------IEPLRID-V--A--R-DWT--GFTLRNGQDFADSAFSFRYEVEAD----GGALDGGTV-DVAPVAPQSETVVELPGSVAA------L-------AAGLSDGRPAVLTVRAVLGASAWAEVAWGQSVREPGA---------GQGGQGA------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |