Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MWIPYGLLGPLKAESAPETVRNSAEDTNEREFLVGFFVRNPVTQVWEVDILLNNGTHSETLNFHGRPAVMNLFPNDAGKLDEILYRIEACSAQQAVDACYAHVTTQLASWALRLGRGMAVAGWRVADLKHETRWRCVPFRPSALELKQPTLDQVPDTHRHLLHLYGEVRNATSPAWRLLNAMTILRAWRDRAEPFGSTDQRASEVGQSRREHLVTFETLMHSGAGSSASDLRDKPLAELIQRLEPVCRKVIRALEGERDAYSVPTRAEAAQLAEFANLADACAREVLTGEL |
1 | 4y4mA | 0.04 | 0.03 | 0.69 | 0.58 | DisCoVER | | IVEADVVIVGAGPSG-LTCARYLAKEGFKVVVLEFGGGTWGGGGFPYIVVEDLREVGIKLIDM--GDGYYVA-D---SVEVPALAVAAMAGA-KILTGIV----------VE--DLIGVAGVVINSYALHIDPLTIRSKVV-VD------------A--TGHEASIVNILVKKNKLE-ADVP-----------------------------G-EKS-MWAEKGENALLRNTREFVCGMAANASHGG--YR--MG-------A-----------IF-GGMYLSGKLCAELI- |
2 | 2vdcA | 0.09 | 0.06 | 0.70 | 0.67 | DEthreader | | -F--IGAGIHVAVPQKFFKD--------DNKLAVGQVFLPRISLDAACCIVE------TEILAFG--YYIYGWRQV-PEIEQIIVGNGVSD-EQFELDLYIIRRRIEKAVKGEQ-INDFYICSLSARSESDFAIYHTWPLA------------GTHMQDLKPVIG--VG-L--S---DSGSLDTVFEVMVRA--G----RTAPMVKMVPCNMEPWDQNFS-----AHTHLIRSNL-TF---G-SSYG-N--P-YSIEDL-----IGTIAA--------------------- |
3 | 1ekrA | 0.10 | 0.04 | 0.41 | 0.77 | CEthreader | | --------------GEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIHHKGDVFATARIAGIQAKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKKDMVIGPVRLLAKSSGDFK------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3hdiA | 0.10 | 0.08 | 0.79 | 0.82 | EigenThreader | | -----------IDNGVRI---ITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTIGGQVNAFTS---KEYTCYYAKVLDDHAGQAIDTLSDMFFHMLRHYMDRFYTGDYVVISVAGNVHDELIDKIKETFSQVKPTTYNYQGELPI-------------GDKDVYALVLLNNVLGLFQDIREKRGL--------------CYSVFSYHSF-------------RDSETTSALAEKELENGKEQLKGSLMLSLESSLDEMIEQINAVQDVSRLAKILL---S |
5 | 4db3A | 0.12 | 0.08 | 0.69 | 0.28 | HHpred | | ------------------------------------------------NLYFQSNAMYYGFDVGGTKIEFGAFN-EKLEVATERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGM--EDADDATVLTV-NVP--AA--K---GKP-------LRADLEAKIGRNDANCFAL-----SEAWDEEQDA---PSVMGLILGTGFKGNNVAGEMRLPDGKKGCLDSYL--SGRGFELLYAHYYIDIIKANA-----AGDE--KAAEHVERFMELAICFGN------- |
6 | 3ilwA | 0.13 | 0.09 | 0.68 | 0.53 | MRFsearch | | -----------------------------GSIRMRG----------VVEVEEDS-RGRTSLVITELAGISNIEDQSSRVGLRIVIEIKRAVAKVVINNLYKHTQ---------LQTSFGANMLAIVD----GVPRTL---------------RLDQLIRYYVDHQLDVIVRRTILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAIL---------------DMQLRRLAALERQRIIDDL-----------AKIEAEIADLEDILAKRQRGIVRDEL |
7 | 3c18A | 0.12 | 0.10 | 0.83 | 0.59 | FFAS-3D | | ------------EQATRTIYSEYAAYPE----TQGIIAVDSLTDQFDVLLLVSVEWTVKHYRLNTLRVSLHLVH-----------------EQVLSRWLILNANRRAVHWVSE--------GTIIFERNDYLT----DLKKQLRNFPETERCLQSLSFAKLLRRFQDGRDAYTHVHHALHHLARLSVLEKGAHPEVVVWEQARLDDPD--VYKLYEQLLLSEETLEQRIHL---ALIGLQSKVLSGGKYLFEVRERDRPWTHELEESRLTELKDLGSLVDFFIRKGLIRIS |
8 | 5cqcA1 | 0.09 | 0.08 | 0.81 | 0.59 | SPARKS-K | | --------SIYPPETS---WEVNKGMNSSRLHKLYSLFFD-KSSAFYLDDVSVLLTGAYGFQSKKNDQQIFLFRPDSDYV--AGYHVDAKS--DAGDKLDRRLSEISEFCSKATQPATFILPFVEMPTVQHQVLLTISYDPKSKQGRDTYSESLSS-------------------------------YFKGKYRTTCDTQSIEKAIKSTDFTLGKFTRAAYNT--------EGNCGSYTFRTIKEVISSSAQG-TTSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGK |
9 | 5ol2C | 0.10 | 0.06 | 0.65 | 0.58 | CNFpred | | -----------------------------DEYILNGSKIFITN-AIAGDIYVV-----MAMTD-NKGISAFIVEKG-----TPGFSFGVKEKKMGIRGS--------------ATSELIFEDCRIPKE-----NLLGK------------EGQGFKIAMSTLDGGRIGIA----AQALGLAQGALDETVKYVKERVQFGRPLSKFQNT------------------------QFQLADMEVKVQAARHLVYQAAINKDLG--PYGVEAAMAKLFAAETAMEVTTKAVQLHG |
10 | 2o8cB | 0.07 | 0.05 | 0.72 | 0.83 | DEthreader | | QNACRIITKTQVLFEK--GNLSKETKTIL--FWDATTLLEEEYFREKLVMLPQ--VLKG-----------MTSESSIGLTPGSELAL--------S--A---L------------------GGCV---------FYLKKLIDQELMANFEEY-FGRDLERLLSKIHNVSKSDSMEYSKKKIIDFLSALEGFKVMCKIIGIMEEVADSLFDLTVELN----------------RWDTAFDHEKARKTGLI-------GIGRLINAEERRDVSLKDCMRRLFYNFDKNYKDWS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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