Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YWGSDLKVEQVLTAKEWQSKMVTVITDSLQEESVGPLRKVDVTSNVKYLPNGSYIRVATVRLYANNAESENVINISETGEWDISDNYLLVSPIEFKDVSSAQSKDFTADQLKLITQIFKMDAQQSRRIDIVNEKTLLLTSLSHGSTVLF |
1 | 1bp1A | 0.06 | 0.05 | 0.83 | 1.00 | DEthreader | | VRIVVYL--GLSDYFFNGLQLKMTLRDDMIRLTFKIQIHVSATPHLSVQPT-GLTFYPAVDVQAFASLFLIGMHTTGSMEVSAENRLVGELK--LDRLLLELKVLLQDIMNYIVPILVLPRVNELQKGF-------------------- |
2 | 4oebA | 0.06 | 0.04 | 0.67 | 0.64 | DisCoVER | | VIIIIHNV--GSKDVKIKNLKPSWGKLHLQINACGAEGTTGTFDLVDPA-DGDKQVRHFYWDCPWGSKTNTWTVSGSN-------TKWIEYSGQ-------NLDSG------AL------GTITVDTLK-------------------- |
3 | 3mi6A | 0.05 | 0.04 | 0.80 | 0.83 | DEthreader | | -----QPAFQVRITELTYHYLLGKQRLANL--PS--TFDTLVVSFNDRI---TGLALDLNYSIFPHQDVIVKSAKTNPSSEK-----LVLNR-AL-SQLDL------PFGFNLVYFLTGINPDFGWNLATF----QTPALELPRILY-G |
4 | 1oh2Q | 0.07 | 0.07 | 0.99 | 0.80 | CEthreader | | LHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLK-PEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDW |
5 | 5ixmA3 | 0.05 | 0.04 | 0.77 | 0.70 | EigenThreader | | ---------WRINDQLGLKGGAQYD-------TRLGSLTLGNAIMEYRKDADRMIQLNYRYASNPDYQQGISQVGTTASW-PIADRWAIV----GAYYY---DTKAK-----------QPASQLVGLQYNTCCWAVNLGYQGQTGFNIE |
6 | 4nw4A2 | 0.18 | 0.13 | 0.74 | 0.35 | HHpred | | --VTNKSGDKILGTTLWNGTKV-VDKNG---NDV-TAANQNFISLAKFDPNSKY------EFFNLQTGET-R---GDFGYFQVVDNIAHVSIGTYLELTELNNDRFTYT-------RGKDNAGNDIQVFVEHEP--------------- |
7 | 5ekqA | 0.13 | 0.10 | 0.75 | 0.43 | MRFsearch | | -----------------RVDLKLVFQEG----VSAEIQQINIVGNHAFTTDRFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLS-------GVEVSGNLAEPGELYNGTKVTDIKKLLGRYGYAYPRVQSMPDKTVKLRV--------- |
8 | 5kevB | 0.13 | 0.09 | 0.68 | 0.46 | FFAS-3D | | -----------------------------------PVHFYETSYKYQAA-DSTYMHDVAINVSIKGNHFTSDIIIRELVKYNVIGHYLNFDNIDVYTGTNKYKEPTSISSL----------INKSNNIRVVSEEYVVVEFFFYDGQII- |
9 | 5mtwC | 0.09 | 0.08 | 0.87 | 0.67 | SPARKS-K | | ---QRVGARLAARAQIRDIRLLRTQAAVHRAPKPAQGLTYDLEFEPAVDADPVVRISCHLRIQNQATQDVATADFEFAALFDYH-----------------LEDDPTEEELTAYAATTGRFALYPYIREYVYDLTGRLALPPLTLEILS |
10 | 6manA | 0.15 | 0.08 | 0.55 | 0.63 | CNFpred | | ---------------------------------------------------------NGIYLHVK--DSEFYAASTD-------GHRLSVSSVVLAEKIEDFGVILPQKSAEEILKIVKDSKNANADIEILLSNKIKFICN-ENVIMLS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|